Difference between revisions of "TSS:Hg 106662.1"
From referenceTSS
| Line 4: | Line 4: | ||
|FBXW1A= | |FBXW1A= | ||
|FWD1= | |FWD1= | ||
| − | |all_trans=ENST00000408038.6:0 | + | |all_trans=ENST00000408038.6:0 ENST00000370187.8:0 NM_003939:0 NM_033637:0 CR749295:0 AF129530:0 Y14153:0 BC027994:0 GU727631:0 AK313353:0 AY207475:0 AY207476:0 AK295870:0 CU693362:5 AB587367:5 KU178451:5 KU178452:5 KU178453:5 KU178454:5 JF432214:5 KJ892659:5 AF101784:5 ENST00000465182.1:6 AK313417:-14 ENST00000475200.5:-15 ENST00000393441.8:-51 NM_001256856:-51 ENST00000370183.2:358 |
|bTrCP= | |bTrCP= | ||
|bTrCP1= | |bTrCP1= | ||
| Line 11: | Line 11: | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-35 |
|end=101354176 | |end=101354176 | ||
|end_of_center_position=101354130 | |end_of_center_position=101354130 | ||
|entrez_id=8945 | |entrez_id=8945 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=BETA-TRCP | + | |gene_alias=BETA-TRCP{{!}}FBW1A{{!}}FBXW1{{!}}FBXW1A{{!}}FWD1{{!}}bTrCP{{!}}bTrCP1{{!}}betaTrCP |
|gene_description=beta-transducin repeat containing E3 ubiquitin protein ligase | |gene_description=beta-transducin repeat containing E3 ubiquitin protein ligase | ||
|gene_id=8945 | |gene_id=8945 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:1144 | |hgnc_mgi_id=HGNC:1144 | ||
|nearest_ensembl=ENSG00000166167 | |nearest_ensembl=ENSG00000166167 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003939 |
|nearest_refseq=NM_003939 | |nearest_refseq=NM_003939 | ||
|nearest_unigene=Hs.643802 | |nearest_unigene=Hs.643802 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=101354083 | |start=101354083 | ||
|start_of_center_position=101354129 | |start_of_center_position=101354129 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000408038.6 | + | |transcript_name=ENST00000408038.6 ENST00000370187.8 NM_003939 NM_033637 CR749295 AF129530 Y14153 BC027994 GU727631 AK313353 AY207475 AY207476 AK295870 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106662.1 | |tss_id=hg_106662.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q68DS0 Q86WI4 Q86WI5 Q9Y297 | + | |uniprot_id=A0A0S2Z4P6 Q68DS0 Q86WI4 Q86WI5 Q9Y297 |
}} | }} | ||
Revision as of 18:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 101354129 |
|---|---|
| End of the center position in the TSS region: | 101354130 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000408038.6 ENST00000370187.8 NM_003939 NM_033637 CR749295 AF129530 Y14153 BC027994 GU727631 AK313353 AY207475 AY207476 AK295870 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000408038.6:0 ENST00000370187.8:0 NM_003939:0 NM_033637:0 CR749295:0 AF129530:0 Y14153:0 BC027994:0 GU727631:0 AK313353:0 AY207475:0 AY207476:0 AK295870:0 CU693362:5 AB587367:5 KU178451:5 KU178452:5 KU178453:5 KU178454:5 JF432214:5 KJ892659:5 AF101784:5 ENST00000465182.1:6 AK313417:-14 ENST00000475200.5:-15 ENST00000393441.8:-51 NM_001256856:-51 ENST00000370183.2:358 |
TATA-Box annotation
| Distance to TSS: | -35 |
|---|---|
| Nearest PromoterID: | NM_003939 |
| Entrez ID: | 8945 |
| Nearest Unigene: | Hs.643802 |
| Nearest Refseq: | NM_003939 |
| Nearest Ensembl: | ENSG00000166167 |
| Gene Name: | beta-transducin repeat containing E3 ubiquitin protein ligase |
| Gene Alias: | BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP |
| Gene Description: | beta-transducin repeat containing E3 ubiquitin protein ligase |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
