Difference between revisions of "TSS:Hg 106687.1"
From referenceTSS
| Line 3: | Line 3: | ||
|NS5ATP13= | |NS5ATP13= | ||
|P130= | |P130= | ||
| − | |all_trans= | + | |all_trans=ENST00000405356.5:-58 NM_001284388:-58 LF211442:90 MA447019:90 Z34289:98 ENST00000605788.6:127 NM_001284389:127 NM_004741:127 AK225101:127 AK314363:127 ENST00000464969.6:133 AK056755:133 ENST00000488254.6:142 ENST00000603946.5:142 BC001883:142 BC006769:142 ENST00000461421.5:147 DQ891862:148 DQ895051:148 AB383719:149 AY820769:149 ENST00000476468.5:151 ENST00000370007.5:153 D21262:153 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 12: | Line 12: | ||
|entrez_id=9221 | |entrez_id=9221 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=NOPP130 | + | |gene_alias=NOPP130{{!}}NOPP140{{!}}NS5ATP13{{!}}P130 |
|gene_description=nucleolar and coiled-body phosphoprotein 1 | |gene_description=nucleolar and coiled-body phosphoprotein 1 | ||
|gene_id=9221 | |gene_id=9221 | ||
| Line 18: | Line 18: | ||
|gene_source=HGNC:15608 | |gene_source=HGNC:15608 | ||
|gene_symbol=NOLC1 | |gene_symbol=NOLC1 | ||
| − | |gene_synonyms=KIAA0035 NOPP130 NOPP140 P130 | + | |gene_synonyms=KIAA0035 NOPP130 NOPP140 P130 Srp40 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:15608 | |hgnc_mgi_id=HGNC:15608 | ||
|nearest_ensembl=ENSG00000166197 | |nearest_ensembl=ENSG00000166197 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284388 |
|nearest_refseq=NM_004741 | |nearest_refseq=NM_004741 | ||
|nearest_unigene=Hs.523238 | |nearest_unigene=Hs.523238 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=102152233 | |start=102152233 | ||
|start_of_center_position=102152247 | |start_of_center_position=102152247 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000405356.5 NM_001284388 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106687.1 | |tss_id=hg_106687.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q14978 | + | |uniprot_id=Q14978 |
}} | }} | ||
Revision as of 18:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102152247 |
|---|---|
| End of the center position in the TSS region: | 102152248 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000405356.5 NM_001284388 |
|---|---|
| Distance: | -58 |
| Num_trans: | 24 |
| All_trans: | ENST00000405356.5:-58 NM_001284388:-58 LF211442:90 MA447019:90 Z34289:98 ENST00000605788.6:127 NM_001284389:127 NM_004741:127 AK225101:127 AK314363:127 ENST00000464969.6:133 AK056755:133 ENST00000488254.6:142 ENST00000603946.5:142 BC001883:142 BC006769:142 ENST00000461421.5:147 DQ891862:148 DQ895051:148 AB383719:149 AY820769:149 ENST00000476468.5:151 ENST00000370007.5:153 D21262:153 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001284388 |
| Entrez ID: | 9221 |
| Nearest Unigene: | Hs.523238 |
| Nearest Refseq: | NM_004741 |
| Nearest Ensembl: | ENSG00000166197 |
| Gene Name: | nucleolar and coiled-body phosphoprotein 1 |
| Gene Alias: | NOPP130|NOPP140|NS5ATP13|P130 |
| Gene Description: | nucleolar and coiled-body phosphoprotein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
