Difference between revisions of "TSS:Hg 106735.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=-2095 |entrez_id=81603 |gc_percent=0.736318 |gene_alias=GERP|RNF27 |gene_description=tripartite motif containing 8 |gene_name=T...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RNF27= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=NA | ||
|distance_to_tss=-2095 | |distance_to_tss=-2095 | ||
| + | |end=102642406 | ||
| + | |end_of_center_position=102642400 | ||
|entrez_id=81603 | |entrez_id=81603 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=GERP | + | |gene_alias=GERP{{!}}RNF27 |
|gene_description=tripartite motif containing 8 | |gene_description=tripartite motif containing 8 | ||
|gene_name=TRIM8 | |gene_name=TRIM8 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000171206 | |nearest_ensembl=ENSG00000171206 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_030912 |
|nearest_refseq=NM_030912 | |nearest_refseq=NM_030912 | ||
|nearest_unigene=Hs.336810 | |nearest_unigene=Hs.336810 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=102642393 | ||
| + | |start_of_center_position=102642399 | ||
| + | |strand=+ | ||
| + | |tata_box=-34(GCCGATTAAAGG,-,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106735.1 | |tss_id=hg_106735.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:44, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102642399 |
|---|---|
| End of the center position in the TSS region: | 102642400 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -2095 |
|---|---|
| Nearest PromoterID: | NM_030912 |
| Entrez ID: | 81603 |
| Nearest Unigene: | Hs.336810 |
| Nearest Refseq: | NM_030912 |
| Nearest Ensembl: | ENSG00000171206 |
| Gene Name: | TRIM8 |
| Gene Alias: | GERP|RNF27 |
| Gene Description: | tripartite motif containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GCCGATTAAAGG,-,0.00) |
