Difference between revisions of "TSS:Hg 106745.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RNF27= | |RNF27= | ||
| − | |all_trans=NM_030912: | + | |all_trans=ENST00000643721.2:271 NM_030912:271 ENST00000302424.12:287 NM_001345950:287 NR_144321:287 BC021925:288 AL360160:401 AF281046:401 DQ895209:408 DQ892019:408 AF220034:410 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| − | |distance= | + | |distance=271 |
|distance_to_tss=-309 | |distance_to_tss=-309 | ||
|end=102644208 | |end=102644208 | ||
| Line 10: | Line 10: | ||
|entrez_id=81603 | |entrez_id=81603 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=GERP | + | |gene_alias=GERP{{!}}RNF27 |
|gene_description=tripartite motif containing 8 | |gene_description=tripartite motif containing 8 | ||
|gene_id=81603 | |gene_id=81603 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:15579 | |hgnc_mgi_id=HGNC:15579 | ||
|nearest_ensembl=ENSG00000171206 | |nearest_ensembl=ENSG00000171206 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_030912 |
|nearest_refseq=NM_030912 | |nearest_refseq=NM_030912 | ||
|nearest_unigene=Hs.336810 | |nearest_unigene=Hs.336810 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=102644164 | |start=102644164 | ||
|start_of_center_position=102644186 | |start_of_center_position=102644186 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_030912 | + | |transcript_name=ENST00000643721.2 NM_030912 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106745.1 | |tss_id=hg_106745.1 | ||
Revision as of 18:44, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102644186 |
|---|---|
| End of the center position in the TSS region: | 102644187 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000643721.2 NM_030912 |
|---|---|
| Distance: | 271 |
| Num_trans: | 11 |
| All_trans: | ENST00000643721.2:271 NM_030912:271 ENST00000302424.12:287 NM_001345950:287 NR_144321:287 BC021925:288 AL360160:401 AF281046:401 DQ895209:408 DQ892019:408 AF220034:410 |
TATA-Box annotation
| Distance to TSS: | -309 |
|---|---|
| Nearest PromoterID: | NM_030912 |
| Entrez ID: | 81603 |
| Nearest Unigene: | Hs.336810 |
| Nearest Refseq: | NM_030912 |
| Nearest Ensembl: | ENSG00000171206 |
| Gene Name: | tripartite motif containing 8 |
| Gene Alias: | GERP|RNF27 |
| Gene Description: | tripartite motif containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
