Difference between revisions of "TSS:Hg 10676.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CAPPB= | |CAPPB= | ||
|CAPZ= | |CAPZ= | ||
| − | |all_trans= | + | |all_trans=ENST00000674449.1:-241 AK313113:-241 ENST00000375142.5:-249 BC107752:-251 ENST00000264203.7:-277 AK125085:-277 ENST00000482808.2:-301 ENST00000375144.6:-301 ENST00000674432.1:-301 ENST00000264202.8:-303 ENST00000459967.6:-303 NM_004930:-303 NM_001206541:-303 NM_001206540:-303 NM_001313932:-303 ENST00000674390.1:318 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=-241 | |distance=-241 | ||
| − | |distance_to_tss= | + | |distance_to_tss=317 |
|end=19485236 | |end=19485236 | ||
|end_of_center_position=19485223 | |end_of_center_position=19485223 | ||
|entrez_id=832 | |entrez_id=832 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=CAPB | + | |gene_alias=CAPB{{!}}CAPPB{{!}}CAPZ |
| − | |gene_description=capping actin protein of muscle Z-line beta | + | |gene_description=capping actin protein of muscle Z-line subunit beta |
|gene_id=832 | |gene_id=832 | ||
| − | |gene_name=capping actin protein of muscle Z-line beta | + | |gene_name=capping actin protein of muscle Z-line subunit beta |
|gene_source=HGNC:1491 | |gene_source=HGNC:1491 | ||
|gene_symbol=CAPZB | |gene_symbol=CAPZB | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:1491 | |hgnc_mgi_id=HGNC:1491 | ||
|nearest_ensembl=ENSG00000077549 | |nearest_ensembl=ENSG00000077549 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004930 |
|nearest_refseq=NM_004930 | |nearest_refseq=NM_004930 | ||
|nearest_unigene=Hs.432760 | |nearest_unigene=Hs.432760 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=19485208 | |start=19485208 | ||
|start_of_center_position=19485222 | |start_of_center_position=19485222 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000674449.1 AK313113 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10676.1 | |tss_id=hg_10676.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B2R7T8 | + | |uniprot_id=A0A6I8PIN8 B2R7T8 |
}} | }} | ||
Revision as of 18:45, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19485222 |
|---|---|
| End of the center position in the TSS region: | 19485223 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000674449.1 AK313113 |
|---|---|
| Distance: | -241 |
| Num_trans: | 16 |
| All_trans: | ENST00000674449.1:-241 AK313113:-241 ENST00000375142.5:-249 BC107752:-251 ENST00000264203.7:-277 AK125085:-277 ENST00000482808.2:-301 ENST00000375144.6:-301 ENST00000674432.1:-301 ENST00000264202.8:-303 ENST00000459967.6:-303 NM_004930:-303 NM_001206541:-303 NM_001206540:-303 NM_001313932:-303 ENST00000674390.1:318 |
TATA-Box annotation
| Distance to TSS: | 317 |
|---|---|
| Nearest PromoterID: | NM_004930 |
| Entrez ID: | 832 |
| Nearest Unigene: | Hs.432760 |
| Nearest Refseq: | NM_004930 |
| Nearest Ensembl: | ENSG00000077549 |
| Gene Name: | capping actin protein of muscle Z-line subunit beta |
| Gene Alias: | CAPB|CAPPB|CAPZ |
| Gene Description: | capping actin protein of muscle Z-line subunit beta |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
