Difference between revisions of "TSS:Hg 108142.1"
From referenceTSS
| Line 4: | Line 4: | ||
|IMD41= | |IMD41= | ||
|TCGFR= | |TCGFR= | ||
| − | |all_trans= | + | |all_trans=ENST00000644262.1:127 ENST00000379959.8:130 NM_001308243:130 NM_001308242:130 NM_000417:130 AK313847:130 ENST00000379954.5:188 X01057:188 K03122:188 AK223313:205 ENST00000256876.10:207 BC156627:346 BC152889:346 AB528862:346 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 13: | Line 13: | ||
|entrez_id=3559 | |entrez_id=3559 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias=CD25 | + | |gene_alias=CD25{{!}}IDDM10{{!}}IL2R{{!}}IMD41{{!}}TCGFR{{!}}p55 |
|gene_description=interleukin 2 receptor subunit alpha | |gene_description=interleukin 2 receptor subunit alpha | ||
|gene_id=3559 | |gene_id=3559 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:6008 | |hgnc_mgi_id=HGNC:6008 | ||
|nearest_ensembl=ENSG00000134460 | |nearest_ensembl=ENSG00000134460 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000417 |
|nearest_refseq=NM_000417 | |nearest_refseq=NM_000417 | ||
|nearest_unigene=Hs.231367 | |nearest_unigene=Hs.231367 | ||
| − | |num_trans= | + | |num_trans=14 |
|p55= | |p55= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=6062504 | |start_of_center_position=6062504 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-60(CCTTTTATGGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000644262.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_108142.1 | |tss_id=hg_108142.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 19:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6062504 |
|---|---|
| End of the center position in the TSS region: | 6062505 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000644262.1 |
|---|---|
| Distance: | 127 |
| Num_trans: | 14 |
| All_trans: | ENST00000644262.1:127 ENST00000379959.8:130 NM_001308243:130 NM_001308242:130 NM_000417:130 AK313847:130 ENST00000379954.5:188 X01057:188 K03122:188 AK223313:205 ENST00000256876.10:207 BC156627:346 BC152889:346 AB528862:346 |
TATA-Box annotation
| Distance to TSS: | -134 |
|---|---|
| Nearest PromoterID: | NM_000417 |
| Entrez ID: | 3559 |
| Nearest Unigene: | Hs.231367 |
| Nearest Refseq: | NM_000417 |
| Nearest Ensembl: | ENSG00000134460 |
| Gene Name: | interleukin 2 receptor subunit alpha |
| Gene Alias: | CD25|IDDM10|IL2R|IMD41|TCGFR|p55 |
| Gene Description: | interleukin 2 receptor subunit alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -60(CCTTTTATGGGC,+,0.00) |
