Difference between revisions of "TSS:Hg 108743.1"
From referenceTSS
| Line 5: | Line 5: | ||
|SSH3BP= | |SSH3BP= | ||
|SSH3BP1= | |SSH3BP1= | ||
| − | |all_trans=ENST00000376166.5:0 | + | |all_trans=ENST00000376166.5:0 ENST00000346832.10:0 AK126803:0 AF260262:0 AK298646:0 ENST00000376160.5:3 ENST00000376139.6:5 ENST00000376140.4:18 NM_001012750:18 AK291823:28 BC024254:38 AB209268:38 ENST00000376138.7:-39 AB040151:-39 ENST00000376142.6:41 ENST00000359188.8:41 BC013238:41 U87166:41 AF006516:47 LF346276:78 MA581853:78 ENST00000376170.8:84 AF001628:86 AK296751:91 ENST00000536334.5:-96 ENST00000490841.6:-96 ENST00000376137.8:-96 NM_001348029:-96 NM_001348030:-96 NM_001178125:-96 NM_001178119:-96 NM_001178121:-96 NM_001178122:-96 NM_001178123:-96 NM_001178124:-96 NM_001012751:-96 NM_001178120:-96 NM_001348034:-96 NM_001348033:-96 NM_001178116:-96 NM_001348032:-96 NM_001348031:-96 NM_005470:-96 NM_001012752:-96 NR_145410:-96 LF383677:-96 MA619254:-96 AF540955:101 FJ380057:113 FJ380058:113 FJ380059:113 AB529081:113 KJ904640:114 LF346275:178 MA581852:178 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 14: | Line 14: | ||
|entrez_id=10006 | |entrez_id=10006 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=ABI-1 | + | |gene_alias=ABI-1{{!}}ABLBP4{{!}}E3B1{{!}}NAP1BP{{!}}SSH3BP{{!}}SSH3BP1 |
|gene_description=abl interactor 1 | |gene_description=abl interactor 1 | ||
|gene_id=10006 | |gene_id=10006 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:11320 | |hgnc_mgi_id=HGNC:11320 | ||
|nearest_ensembl=ENSG00000136754 | |nearest_ensembl=ENSG00000136754 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001178124 |
|nearest_refseq=NM_005470 | |nearest_refseq=NM_005470 | ||
|nearest_unigene=Hs.508148 | |nearest_unigene=Hs.508148 | ||
| − | |num_trans= | + | |num_trans=55 |
|species=human | |species=human | ||
|start=26860975 | |start=26860975 | ||
|start_of_center_position=26860983 | |start_of_center_position=26860983 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000376166.5 | + | |transcript_name=ENST00000376166.5 ENST00000346832.10 AK126803 AF260262 AK298646 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_108743.1 | |tss_id=hg_108743.1 | ||
Revision as of 19:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26860983 |
|---|---|
| End of the center position in the TSS region: | 26860984 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376166.5 ENST00000346832.10 AK126803 AF260262 AK298646 |
|---|---|
| Distance: | 0 |
| Num_trans: | 55 |
| All_trans: | ENST00000376166.5:0 ENST00000346832.10:0 AK126803:0 AF260262:0 AK298646:0 ENST00000376160.5:3 ENST00000376139.6:5 ENST00000376140.4:18 NM_001012750:18 AK291823:28 BC024254:38 AB209268:38 ENST00000376138.7:-39 AB040151:-39 ENST00000376142.6:41 ENST00000359188.8:41 BC013238:41 U87166:41 AF006516:47 LF346276:78 MA581853:78 ENST00000376170.8:84 AF001628:86 AK296751:91 ENST00000536334.5:-96 ENST00000490841.6:-96 ENST00000376137.8:-96 NM_001348029:-96 NM_001348030:-96 NM_001178125:-96 NM_001178119:-96 NM_001178121:-96 NM_001178122:-96 NM_001178123:-96 NM_001178124:-96 NM_001012751:-96 NM_001178120:-96 NM_001348034:-96 NM_001348033:-96 NM_001178116:-96 NM_001348032:-96 NM_001348031:-96 NM_005470:-96 NM_001012752:-96 NR_145410:-96 LF383677:-96 MA619254:-96 AF540955:101 FJ380057:113 FJ380058:113 FJ380059:113 AB529081:113 KJ904640:114 LF346275:178 MA581852:178 |
TATA-Box annotation
| Distance to TSS: | 104 |
|---|---|
| Nearest PromoterID: | NM_001178124 |
| Entrez ID: | 10006 |
| Nearest Unigene: | Hs.508148 |
| Nearest Refseq: | NM_005470 |
| Nearest Ensembl: | ENSG00000136754 |
| Gene Name: | abl interactor 1 |
| Gene Alias: | ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 |
| Gene Description: | abl interactor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
