Difference between revisions of "TSS:Hg 109451.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000618427.4:0 ENST00000618804.5:0 ENST00000614220.4:0 ENST00000621119.4:0 ENST00000622363.4:0 ENST00000611933.4:0 ENST00000435852.6:0 ENST00000619059.4:0 NM_001001971:0 NM_001166698:0 NM_001347850:0 NM_198215:0 NM_001347851:0 NM_001347852:0 NM_001347849:0 AK316542:0 BC036453:0 BC064431:0 AK289796:0 AK294805:0 ENST00000422313.6:43 KJ895852:43 KJ900467:43 DQ894404:43 EU176262:43 CU687880:43 ENST00000470220.5:-101 ENST00000503444.1:-230 ENST00000468840.6:-303 NM_001347847:-303 NM_001347845:-303 NM_001347844:-303 NM_001347843:-303 NM_001347848:-303 NM_001143773:-303 NM_001347846:-303 AK299924:-303 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=59362600 | |end=59362600 | ||
|end_of_center_position=59362552 | |end_of_center_position=59362552 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:19371 | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_198215 |
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| − | |num_trans= | + | |num_trans=37 |
|species=human | |species=human | ||
|start=59362502 | |start=59362502 | ||
|start_of_center_position=59362551 | |start_of_center_position=59362551 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001001971 NM_001166698 NM_001347850 NM_198215 NM_001347851 NM_001347852 NM_001347849 AK316542 BC036453 BC064431 AK289796 AK294805 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109451.1 | |tss_id=hg_109451.1 | ||
Revision as of 19:47, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 59362551 |
|---|---|
| End of the center position in the TSS region: | 59362552 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001001971 NM_001166698 NM_001347850 NM_198215 NM_001347851 NM_001347852 NM_001347849 AK316542 BC036453 BC064431 AK289796 AK294805 |
|---|---|
| Distance: | 0 |
| Num_trans: | 37 |
| All_trans: | ENST00000618427.4:0 ENST00000618804.5:0 ENST00000614220.4:0 ENST00000621119.4:0 ENST00000622363.4:0 ENST00000611933.4:0 ENST00000435852.6:0 ENST00000619059.4:0 NM_001001971:0 NM_001166698:0 NM_001347850:0 NM_198215:0 NM_001347851:0 NM_001347852:0 NM_001347849:0 AK316542:0 BC036453:0 BC064431:0 AK289796:0 AK294805:0 ENST00000422313.6:43 KJ895852:43 KJ900467:43 DQ894404:43 EU176262:43 CU687880:43 ENST00000470220.5:-101 ENST00000503444.1:-230 ENST00000468840.6:-303 NM_001347847:-303 NM_001347845:-303 NM_001347844:-303 NM_001347843:-303 NM_001347848:-303 NM_001143773:-303 NM_001347846:-303 AK299924:-303 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_198215 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
