Difference between revisions of "TSS:Hg 109454.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000470220.5 | + | |all_trans=ENST00000470220.5:48 ENST00000503444.1:-71 ENST00000468840.6:-144 NM_001347847:-144 NM_001347845:-144 NM_001347844:-144 NM_001347843:-144 NM_001347848:-144 NM_001143773:-144 NM_001347846:-144 AK299924:-144 ENST00000618427.4:155 ENST00000611933.4:155 NM_001001971:155 NM_001166698:155 NM_001347850:155 NM_001347851:155 NM_001347852:155 NM_001347849:155 BC064431:155 ENST00000622363.4:159 AK316542:159 ENST00000621119.4:185 BC036453:199 ENST00000618804.5:200 NM_198215:200 ENST00000614220.4:202 ENST00000619059.4:227 AK289796:229 AK294805:240 ENST00000435852.6:241 ENST00000422313.6:289 KJ895852:289 KJ900467:289 DQ894404:289 EU176262:289 CU687880:289 ENST00000512919.5:-422 NM_001347842:-422 NM_001347840:-422 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| − | |num_trans= | + | |num_trans=40 |
|species=human | |species=human | ||
|start=59362748 | |start=59362748 | ||
|start_of_center_position=59362753 | |start_of_center_position=59362753 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000470220.5 | + | |transcript_name=ENST00000470220.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109454.1 | |tss_id=hg_109454.1 | ||
Revision as of 19:47, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 59362753 |
|---|---|
| End of the center position in the TSS region: | 59362754 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000470220.5 |
|---|---|
| Distance: | 48 |
| Num_trans: | 40 |
| All_trans: | ENST00000470220.5:48 ENST00000503444.1:-71 ENST00000468840.6:-144 NM_001347847:-144 NM_001347845:-144 NM_001347844:-144 NM_001347843:-144 NM_001347848:-144 NM_001143773:-144 NM_001347846:-144 AK299924:-144 ENST00000618427.4:155 ENST00000611933.4:155 NM_001001971:155 NM_001166698:155 NM_001347850:155 NM_001347851:155 NM_001347852:155 NM_001347849:155 BC064431:155 ENST00000622363.4:159 AK316542:159 ENST00000621119.4:185 BC036453:199 ENST00000618804.5:200 NM_198215:200 ENST00000614220.4:202 ENST00000619059.4:227 AK289796:229 AK294805:240 ENST00000435852.6:241 ENST00000422313.6:289 KJ895852:289 KJ900467:289 DQ894404:289 EU176262:289 CU687880:289 ENST00000512919.5:-422 NM_001347842:-422 NM_001347840:-422 |
TATA-Box annotation
| Distance to TSS: | 149 |
|---|---|
| Nearest PromoterID: | NM_001347847 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
