Difference between revisions of "TSS:Hg 121706.1"
From referenceTSS
| Line 5: | Line 5: | ||
|SLP2= | |SLP2= | ||
|SLP2A= | |SLP2A= | ||
| − | |all_trans= | + | |all_trans=NM_001289609:0 NM_206930:0 NM_001162952:0 ENST00000526999.5:-27 ENST00000527794.5:86 ENST00000534554.1:134 NM_001289610:134 NM_206929:134 ENST00000389958.7:146 ENST00000528566.1:146 AK092121:146 ENST00000533577.1:164 ENST00000529581.5:176 AK074737:176 ENST00000533892.5:216 AK298604:216 NM_001365828:220 NM_001365832:220 NM_001365834:220 NM_001365835:220 NM_001365831:220 NM_001365830:220 NM_001365829:220 NM_001365833:220 ENST00000533057.6:232 ENST00000532995.5:239 BC068495:239 BC110315:435 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 14: | Line 14: | ||
|entrez_id=54843 | |entrez_id=54843 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=CHR11SYT | + | |gene_alias=CHR11SYT{{!}}EXO4{{!}}PPP1R151{{!}}SGA72M{{!}}SLP2{{!}}SLP2A |
|gene_description=synaptotagmin like 2 | |gene_description=synaptotagmin like 2 | ||
|gene_id=54843 | |gene_id=54843 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:15585 | |hgnc_mgi_id=HGNC:15585 | ||
|nearest_ensembl=ENSG00000137501 | |nearest_ensembl=ENSG00000137501 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_206930 |
|nearest_refseq=NM_032379 | |nearest_refseq=NM_032379 | ||
|nearest_unigene=Hs.369520 | |nearest_unigene=Hs.369520 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=85719313 | |start=85719313 | ||
|start_of_center_position=85719331 | |start_of_center_position=85719331 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_206930 | + | |transcript_name=NM_001289609 NM_206930 NM_001162952 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_121706.1 | |tss_id=hg_121706.1 | ||
Revision as of 00:31, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 85719331 |
|---|---|
| End of the center position in the TSS region: | 85719332 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001289609 NM_206930 NM_001162952 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | NM_001289609:0 NM_206930:0 NM_001162952:0 ENST00000526999.5:-27 ENST00000527794.5:86 ENST00000534554.1:134 NM_001289610:134 NM_206929:134 ENST00000389958.7:146 ENST00000528566.1:146 AK092121:146 ENST00000533577.1:164 ENST00000529581.5:176 AK074737:176 ENST00000533892.5:216 AK298604:216 NM_001365828:220 NM_001365832:220 NM_001365834:220 NM_001365835:220 NM_001365831:220 NM_001365830:220 NM_001365829:220 NM_001365833:220 ENST00000533057.6:232 ENST00000532995.5:239 BC068495:239 BC110315:435 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_206930 |
| Entrez ID: | 54843 |
| Nearest Unigene: | Hs.369520 |
| Nearest Refseq: | NM_032379 |
| Nearest Ensembl: | ENSG00000137501 |
| Gene Name: | synaptotagmin like 2 |
| Gene Alias: | CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A |
| Gene Description: | synaptotagmin like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
