Difference between revisions of "TSS:Hg 135993.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NYAP3= | |NYAP3= | ||
|PPP1R107= | |PPP1R107= | ||
| − | |all_trans= | + | |all_trans=NM_015011:-84 ENST00000356711.7:157 AB020672:157 BC146791:157 ENST00000251041.10:187 AL834447:187 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-84 |
| − | |distance_to_tss= | + | |distance_to_tss=87 |
|end=108595995 | |end=108595995 | ||
|end_of_center_position=108595992 | |end_of_center_position=108595992 | ||
|entrez_id=23026 | |entrez_id=23026 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=MYAP3 | + | |gene_alias=MYAP3{{!}}MYR8{{!}}Myo16b{{!}}NYAP3{{!}}PPP1R107 |
|gene_description=myosin XVI | |gene_description=myosin XVI | ||
|gene_id=23026 | |gene_id=23026 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=108595991 | |start_of_center_position=108595991 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(AGTCATAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_015011 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_135993.1 | |tss_id=hg_135993.1 | ||
Revision as of 06:04, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 108595991 |
|---|---|
| End of the center position in the TSS region: | 108595992 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_015011 |
|---|---|
| Distance: | -84 |
| Num_trans: | 6 |
| All_trans: | NM_015011:-84 ENST00000356711.7:157 AB020672:157 BC146791:157 ENST00000251041.10:187 AL834447:187 |
TATA-Box annotation
| Distance to TSS: | 87 |
|---|---|
| Nearest PromoterID: | NM_015011 |
| Entrez ID: | 23026 |
| Nearest Unigene: | Hs.656587 |
| Nearest Refseq: | NM_015011 |
| Nearest Ensembl: | ENSG00000041515 |
| Gene Name: | myosin XVI |
| Gene Alias: | MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 |
| Gene Description: | myosin XVI |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(AGTCATAAAAGG,-,0.00) |
