Difference between revisions of "TSS:Hg 145540.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000384408.1:0 NR_003328:0 | + | |all_trans=ENST00000660956.1:0 ENST00000384408.1:0 NR_003328:0 JX629741:0 ENST00000553108.2:-103 ENST00000661738.1:-186 |
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
|gene_alias=HBII-85-13 | |gene_alias=HBII-85-13 | ||
| − | |gene_description= | + | |gene_description=small nucleolar RNA, C/D box 116-13 |
|gene_id=100033425 | |gene_id=100033425 | ||
| − | |gene_name= | + | |gene_name=small nucleolar RNA host gene 14; small nucleolar RNA, C/D box 116-13 |
| − | |gene_source=HGNC:33079 | + | |gene_source=HGNC:33079 HGNC:37462 |
| − | |gene_symbol=SNORD116-13 | + | |gene_symbol=SNHG14 SNORD116-13 |
| − | |gene_synonyms=HBII-85-13 | + | |gene_synonyms=HBII-85-13 NCRNA00214 UBE3A-AS UBE3A-ATS |
|gene_type=snoRNA | |gene_type=snoRNA | ||
| − | |hgnc_mgi_id=HGNC:33079 | + | |hgnc_mgi_id=HGNC:33079 HGNC:37462 |
|nearest_ensembl=ENSG00000207137 | |nearest_ensembl=ENSG00000207137 | ||
|nearest_promoter_id=NR_003328 | |nearest_promoter_id=NR_003328 | ||
|nearest_refseq=NR_003328 | |nearest_refseq=NR_003328 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=25079056 | |start=25079056 | ||
|start_of_center_position=25079058 | |start_of_center_position=25079058 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000384408.1 NR_003328 | + | |transcript_name=ENST00000660956.1 ENST00000384408.1 NR_003328 JX629741 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_145540.1 | |tss_id=hg_145540.1 | ||
Revision as of 09:45, 16 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 25079058 |
|---|---|
| End of the center position in the TSS region: | 25079059 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000660956.1 ENST00000384408.1 NR_003328 JX629741 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000660956.1:0 ENST00000384408.1:0 NR_003328:0 JX629741:0 ENST00000553108.2:-103 ENST00000661738.1:-186 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NR_003328 |
| Entrez ID: | 100033425 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_003328 |
| Nearest Ensembl: | ENSG00000207137 |
| Gene Name: | small nucleolar RNA host gene 14; small nucleolar RNA, C/D box 116-13 |
| Gene Alias: | HBII-85-13 |
| Gene Description: | small nucleolar RNA, C/D box 116-13 |
| Gene Type: | snoRNA |
| CpG%: | 0.015 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
