Difference between revisions of "TSS:Hg 154757.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HJMD= | |HJMD= | ||
|PCAD= | |PCAD= | ||
| − | |all_trans=ENST00000429102.6 | + | |all_trans=ENST00000429102.6:36 BC014462:36 BC041846:-98 ENST00000542274.5:344 AK296968:344 AK312554:346 ENST00000264012.9:353 NM_001317196:353 NM_001793:353 NM_001317195:353 AK225396:353 X63629:370 AB527800:420 KJ904433:421 EU832319:421 EU832404:421 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=36 | |distance=36 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-365 |
|end=68644957 | |end=68644957 | ||
|end_of_center_position=68644946 | |end_of_center_position=68644946 | ||
|entrez_id=1001 | |entrez_id=1001 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=CDHP | + | |gene_alias=CDHP{{!}}HJMD{{!}}PCAD |
|gene_description=cadherin 3 | |gene_description=cadherin 3 | ||
|gene_id=1001 | |gene_id=1001 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:1754 HGNC:1762 | |hgnc_mgi_id=HGNC:1754 HGNC:1762 | ||
|nearest_ensembl=ENSG00000062038 | |nearest_ensembl=ENSG00000062038 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001317195 |
|nearest_refseq=NM_001793 | |nearest_refseq=NM_001793 | ||
|nearest_unigene=Hs.191842 | |nearest_unigene=Hs.191842 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=68644933 | |start=68644933 | ||
|start_of_center_position=68644945 | |start_of_center_position=68644945 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000429102.6 | + | |transcript_name=ENST00000429102.6 BC014462 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_154757.1 | |tss_id=hg_154757.1 | ||
Revision as of 13:18, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68644945 |
|---|---|
| End of the center position in the TSS region: | 68644946 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429102.6 BC014462 |
|---|---|
| Distance: | 36 |
| Num_trans: | 16 |
| All_trans: | ENST00000429102.6:36 BC014462:36 BC041846:-98 ENST00000542274.5:344 AK296968:344 AK312554:346 ENST00000264012.9:353 NM_001317196:353 NM_001793:353 NM_001317195:353 AK225396:353 X63629:370 AB527800:420 KJ904433:421 EU832319:421 EU832404:421 |
TATA-Box annotation
| Distance to TSS: | -365 |
|---|---|
| Nearest PromoterID: | NM_001317195 |
| Entrez ID: | 1001 |
| Nearest Unigene: | Hs.191842 |
| Nearest Refseq: | NM_001793 |
| Nearest Ensembl: | ENSG00000062038 |
| Gene Name: | cadherin 15; cadherin 3 |
| Gene Alias: | CDHP|HJMD|PCAD |
| Gene Description: | cadherin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
