Difference between revisions of "TSS:Hg 154760.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HJMD= | |HJMD= | ||
|PCAD= | |PCAD= | ||
| − | |all_trans=ENST00000429102.6 | + | |all_trans=ENST00000429102.6:-5 BC014462:-5 BC041846:-162 ENST00000542274.5:297 AK296968:297 AK312554:299 ENST00000264012.9:306 NM_001317196:306 NM_001793:306 NM_001317195:306 AK225396:306 X63629:323 AB527800:373 KJ904433:374 EU832319:374 EU832404:374 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=-5 | |distance=-5 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-309 |
|end=68645004 | |end=68645004 | ||
|end_of_center_position=68645001 | |end_of_center_position=68645001 | ||
|entrez_id=1001 | |entrez_id=1001 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=CDHP | + | |gene_alias=CDHP{{!}}HJMD{{!}}PCAD |
|gene_description=cadherin 3 | |gene_description=cadherin 3 | ||
|gene_id=1001 | |gene_id=1001 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:1754 HGNC:1762 | |hgnc_mgi_id=HGNC:1754 HGNC:1762 | ||
|nearest_ensembl=ENSG00000062038 | |nearest_ensembl=ENSG00000062038 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001317195 |
|nearest_refseq=NM_001793 | |nearest_refseq=NM_001793 | ||
|nearest_unigene=Hs.191842 | |nearest_unigene=Hs.191842 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=68644997 | |start=68644997 | ||
|start_of_center_position=68645000 | |start_of_center_position=68645000 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000429102.6 | + | |transcript_name=ENST00000429102.6 BC014462 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_154760.1 | |tss_id=hg_154760.1 | ||
Revision as of 13:18, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68645000 |
|---|---|
| End of the center position in the TSS region: | 68645001 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429102.6 BC014462 |
|---|---|
| Distance: | -5 |
| Num_trans: | 16 |
| All_trans: | ENST00000429102.6:-5 BC014462:-5 BC041846:-162 ENST00000542274.5:297 AK296968:297 AK312554:299 ENST00000264012.9:306 NM_001317196:306 NM_001793:306 NM_001317195:306 AK225396:306 X63629:323 AB527800:373 KJ904433:374 EU832319:374 EU832404:374 |
TATA-Box annotation
| Distance to TSS: | -309 |
|---|---|
| Nearest PromoterID: | NM_001317195 |
| Entrez ID: | 1001 |
| Nearest Unigene: | Hs.191842 |
| Nearest Refseq: | NM_001793 |
| Nearest Ensembl: | ENSG00000062038 |
| Gene Name: | cadherin 15; cadherin 3 |
| Gene Alias: | CDHP|HJMD|PCAD |
| Gene Description: | cadherin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
