Difference between revisions of "TSS:Hg 154763.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HJMD= | |HJMD= | ||
|PCAD= | |PCAD= | ||
| − | |all_trans=ENST00000542274.5 | + | |all_trans=ENST00000542274.5:20 AK296968:20 AK312554:22 ENST00000264012.9:29 NM_001317196:29 NM_001793:29 NM_001317195:29 AK225396:29 X63629:46 AB527800:96 KJ904433:97 EU832319:97 EU832404:97 ENST00000429102.6:-278 BC014462:-278 ENST00000566808.2:356 BC041846:-435 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=20 | |distance=20 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-34 |
|end=68645281 | |end=68645281 | ||
|end_of_center_position=68645276 | |end_of_center_position=68645276 | ||
|entrez_id=1001 | |entrez_id=1001 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=CDHP | + | |gene_alias=CDHP{{!}}HJMD{{!}}PCAD |
|gene_description=cadherin 3 | |gene_description=cadherin 3 | ||
|gene_id=1001 | |gene_id=1001 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:1754 HGNC:1762 | |hgnc_mgi_id=HGNC:1754 HGNC:1762 | ||
|nearest_ensembl=ENSG00000062038 | |nearest_ensembl=ENSG00000062038 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001317195 |
|nearest_refseq=NM_001793 | |nearest_refseq=NM_001793 | ||
|nearest_unigene=Hs.191842 | |nearest_unigene=Hs.191842 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=68645270 | |start=68645270 | ||
|start_of_center_position=68645275 | |start_of_center_position=68645275 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000542274.5 | + | |transcript_name=ENST00000542274.5 AK296968 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_154763.1 | |tss_id=hg_154763.1 | ||
Revision as of 13:18, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68645275 |
|---|---|
| End of the center position in the TSS region: | 68645276 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000542274.5 AK296968 |
|---|---|
| Distance: | 20 |
| Num_trans: | 17 |
| All_trans: | ENST00000542274.5:20 AK296968:20 AK312554:22 ENST00000264012.9:29 NM_001317196:29 NM_001793:29 NM_001317195:29 AK225396:29 X63629:46 AB527800:96 KJ904433:97 EU832319:97 EU832404:97 ENST00000429102.6:-278 BC014462:-278 ENST00000566808.2:356 BC041846:-435 |
TATA-Box annotation
| Distance to TSS: | -34 |
|---|---|
| Nearest PromoterID: | NM_001317195 |
| Entrez ID: | 1001 |
| Nearest Unigene: | Hs.191842 |
| Nearest Refseq: | NM_001793 |
| Nearest Ensembl: | ENSG00000062038 |
| Gene Name: | cadherin 15; cadherin 3 |
| Gene Alias: | CDHP|HJMD|PCAD |
| Gene Description: | cadherin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
