Difference between revisions of "TSS:Hg 155838.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000339021.4:0 uc059ovi.1:0 AK126997:0 |chr=chr16 |cpg_percent=0.115 |distance=0 |distance_to_tss=-232 |end=1309413 |entrez_id=7329 |gc_percent=0.7...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000339021.4 | + | |P18= |
| + | |UBC9= | ||
| + | |all_trans=ENST00000339021.4:0 AK126997:0 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-241 |
|end=1309413 | |end=1309413 | ||
| + | |end_of_center_position=1309395 | ||
|entrez_id=7329 | |entrez_id=7329 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=C358B7.1 | + | |gene_alias=C358B7.1{{!}}P18{{!}}UBC9 |
|gene_description=ubiquitin conjugating enzyme E2 I | |gene_description=ubiquitin conjugating enzyme E2 I | ||
|gene_id=100130430 | |gene_id=100130430 | ||
| − | |gene_name= | + | |gene_name=UBE2I |
|gene_source=EntrezGene:100130430 | |gene_source=EntrezGene:100130430 | ||
|gene_symbol=LOC100130430 | |gene_symbol=LOC100130430 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_003345 | |nearest_refseq=NM_003345 | ||
|nearest_unigene=Hs.302903 | |nearest_unigene=Hs.302903 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=1309376 | |start=1309376 | ||
| + | |start_of_center_position=1309394 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-25(CGCCCTTAAAGG,-,0.00),-24(GCCCTTAAAGGA,-,0.00),-23(CCCTTAAAGGAG,+,0.00) |
| − | |transcript_name=ENST00000339021.4 | + | |transcript_name=ENST00000339021.4 AK126997 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_155838.1 | |tss_id=hg_155838.1 | ||
Latest revision as of 13:43, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1309394 |
|---|---|
| End of the center position in the TSS region: | 1309395 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000339021.4 AK126997 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000339021.4:0 AK126997:0 |
TATA-Box annotation
| Distance to TSS: | -241 |
|---|---|
| Nearest PromoterID: | NM_003345 |
| Entrez ID: | 7329 |
| Nearest Unigene: | Hs.302903 |
| Nearest Refseq: | NM_003345 |
| Nearest Ensembl: | ENSG00000103275 |
| Gene Name: | UBE2I |
| Gene Alias: | C358B7.1|P18|UBC9 |
| Gene Description: | ubiquitin conjugating enzyme E2 I |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -25(CGCCCTTAAAGG,-,0.00),-24(GCCCTTAAAGGA,-,0.00),-23(CCCTTAAAGGAG,+,0.00) |
