Difference between revisions of "TSS:Hg 159281.1"
From referenceTSS
| Line 6: | Line 6: | ||
|PQLC5= | |PQLC5= | ||
|SL15= | |SL15= | ||
| − | |all_trans=ENST00000571391.5:0 ENST00000578267.5:0 ENST00000585188.5:0 ENST00000359822.10:0 ENST00000580708.5:0 ENST00000580834.5:0 ENST00000572836.5:0 ENST00000577088.5:0 ENST00000584378.5:0 ENST00000423172.6:0 ENST00000576066.5:0 ENST00000584479.5:0 ENST00000572719.5:0 ENST00000579445.5:0 | + | |all_trans=ENST00000571391.5:0 ENST00000578267.5:0 ENST00000585188.5:0 ENST00000359822.10:0 ENST00000580708.5:0 ENST00000580834.5:0 ENST00000572836.5:0 ENST00000577088.5:0 ENST00000250124.11:0 ENST00000584378.5:0 ENST00000423172.6:0 ENST00000576066.5:0 ENST00000584479.5:0 ENST00000572719.5:0 ENST00000579445.5:0 NM_004870:0 AK225401:0 AK075299:0 AF038961:0 AK027742:0 AK297691:0 AK314527:0 AK297001:0 AK225432:0 AK055923:0 AK300083:0 AK300140:0 CU674920:0 HQ448685:0 KJ898044:0 KR709838:0 KR709839:0 KR709840:0 KU178478:0 KU178479:0 KU178480:0 DQ499597:0 ENST00000581886.5:2 ENST00000575256.1:7 BC001898:-7 ENST00000570458.5:11 ENST00000585217.5:12 ENST00000396501.8:-15 ENST00000571822.5:-22 ENST00000576272.5:22 ENST00000581380.1:30 ENST00000574558.1:32 AF059752:-35 DQ585508:63 ENST00000572936.5:-177 NM_001330073:-196 NR_024603:-196 KY814480:-196 KY814481:-196 LF384756:-196 MA620333:-196 LF326383:218 MA561960:218 ENST00000582151.1:-314 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=7583863 | |end=7583863 | ||
|end_of_center_position=7583853 | |end_of_center_position=7583853 | ||
|entrez_id=9526 | |entrez_id=9526 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias=CDGIF | + | |gene_alias=CDGIF{{!}}HBEBP2BPA{{!}}Lec35{{!}}My008{{!}}PP3958{{!}}PQLC5{{!}}SL15{{!}}SLC66A5 |
|gene_description=mannose-P-dolichol utilization defect 1 | |gene_description=mannose-P-dolichol utilization defect 1 | ||
|gene_id=9526 | |gene_id=9526 | ||
| Line 21: | Line 21: | ||
|gene_source=HGNC:7207 | |gene_source=HGNC:7207 | ||
|gene_symbol=MPDU1 | |gene_symbol=MPDU1 | ||
| − | |gene_synonyms=CDGIf Lec35 PQLC5 SL15 | + | |gene_synonyms=CDGIf Lec35 PQLC5 SL15 SLC66A5 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7207 | |hgnc_mgi_id=HGNC:7207 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_004870 | |nearest_refseq=NM_004870 | ||
|nearest_unigene=Hs.246381 | |nearest_unigene=Hs.246381 | ||
| − | |num_trans= | + | |num_trans=59 |
|species=human | |species=human | ||
|start=7583842 | |start=7583842 | ||
|start_of_center_position=7583852 | |start_of_center_position=7583852 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 | + | |transcript_name=ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 NM_004870 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KJ898044 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_159281.1 | |tss_id=hg_159281.1 | ||
Revision as of 15:02, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7583852 |
|---|---|
| End of the center position in the TSS region: | 7583853 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000571391.5 ENST00000578267.5 ENST00000585188.5 ENST00000359822.10 ENST00000580708.5 ENST00000580834.5 ENST00000572836.5 ENST00000577088.5 ENST00000250124.11 ENST00000584378.5 ENST00000423172.6 ENST00000576066.5 ENST00000584479.5 ENST00000572719.5 ENST00000579445.5 NM_004870 AK225401 AK075299 AF038961 AK027742 AK297691 AK314527 AK297001 AK225432 AK055923 AK300083 AK300140 CU674920 HQ448685 KJ898044 KR709838 KR709839 KR709840 KU178478 KU178479 KU178480 DQ499597 |
|---|---|
| Distance: | 0 |
| Num_trans: | 59 |
| All_trans: | ENST00000571391.5:0 ENST00000578267.5:0 ENST00000585188.5:0 ENST00000359822.10:0 ENST00000580708.5:0 ENST00000580834.5:0 ENST00000572836.5:0 ENST00000577088.5:0 ENST00000250124.11:0 ENST00000584378.5:0 ENST00000423172.6:0 ENST00000576066.5:0 ENST00000584479.5:0 ENST00000572719.5:0 ENST00000579445.5:0 NM_004870:0 AK225401:0 AK075299:0 AF038961:0 AK027742:0 AK297691:0 AK314527:0 AK297001:0 AK225432:0 AK055923:0 AK300083:0 AK300140:0 CU674920:0 HQ448685:0 KJ898044:0 KR709838:0 KR709839:0 KR709840:0 KU178478:0 KU178479:0 KU178480:0 DQ499597:0 ENST00000581886.5:2 ENST00000575256.1:7 BC001898:-7 ENST00000570458.5:11 ENST00000585217.5:12 ENST00000396501.8:-15 ENST00000571822.5:-22 ENST00000576272.5:22 ENST00000581380.1:30 ENST00000574558.1:32 AF059752:-35 DQ585508:63 ENST00000572936.5:-177 NM_001330073:-196 NR_024603:-196 KY814480:-196 KY814481:-196 LF384756:-196 MA620333:-196 LF326383:218 MA561960:218 ENST00000582151.1:-314 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_004870 |
| Entrez ID: | 9526 |
| Nearest Unigene: | Hs.246381 |
| Nearest Refseq: | NM_004870 |
| Nearest Ensembl: | ENSG00000129255 |
| Gene Name: | mannose-P-dolichol utilization defect 1 |
| Gene Alias: | CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15|SLC66A5 |
| Gene Description: | mannose-P-dolichol utilization defect 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
