Difference between revisions of "TSS:Hg 171531.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CDw325= | |CDw325= | ||
|NCAD= | |NCAD= | ||
| + | |all_trans=ENST00000676445.1:12 | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| − | |distance= | + | |distance=12 |
| − | |distance_to_tss=- | + | |distance_to_tss=-861 |
|end=28178024 | |end=28178024 | ||
|end_of_center_position=28177991 | |end_of_center_position=28177991 | ||
|entrez_id=1000 | |entrez_id=1000 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=CD325 | + | |gene_alias=CD325{{!}}CDHN{{!}}CDw325{{!}}NCAD |
|gene_description=cadherin 2 | |gene_description=cadherin 2 | ||
| − | |gene_name=CDH2 | + | |gene_id=1000 |
| + | |gene_name=cadherin 2 | ||
| + | |gene_source=HGNC:1759 | ||
| + | |gene_symbol=CDH2 | ||
| + | |gene_synonyms=CD325 CDHN | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1759 | ||
|nearest_ensembl=ENSG00000170558 | |nearest_ensembl=ENSG00000170558 | ||
|nearest_promoter_id=NM_001792 | |nearest_promoter_id=NM_001792 | ||
|nearest_refseq=NM_001792 | |nearest_refseq=NM_001792 | ||
|nearest_unigene=Hs.464829 | |nearest_unigene=Hs.464829 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=28177957 | |start=28177957 | ||
|start_of_center_position=28177990 | |start_of_center_position=28177990 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000676445.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_171531.1 | |tss_id=hg_171531.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:44, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 28177990 |
|---|---|
| End of the center position in the TSS region: | 28177991 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000676445.1 |
|---|---|
| Distance: | 12 |
| Num_trans: | 1 |
| All_trans: | ENST00000676445.1:12 |
TATA-Box annotation
| Distance to TSS: | -861 |
|---|---|
| Nearest PromoterID: | NM_001792 |
| Entrez ID: | 1000 |
| Nearest Unigene: | Hs.464829 |
| Nearest Refseq: | NM_001792 |
| Nearest Ensembl: | ENSG00000170558 |
| Gene Name: | cadherin 2 |
| Gene Alias: | CD325|CDHN|CDw325|NCAD |
| Gene Description: | cadherin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
