Difference between revisions of "TSS:Hg 171620.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HRIHFB2255= | |HRIHFB2255= | ||
|NOLP= | |NOLP= | ||
| − | |all_trans=ENST00000588355.1:-120 | + | |all_trans=ENST00000588355.1:-120 ENST00000261592.10:-123 NM_003787:-123 NM_001384469:-123 NM_001384470:-123 NM_001384467:-123 NM_001384473:-123 NM_001384468:-123 NM_001384471:-123 NM_001384472:-123 ENST00000590846.1:-162 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 11: | Line 11: | ||
|entrez_id=8715 | |entrez_id=8715 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=CT125 | + | |gene_alias=CT125{{!}}HRIHFB2255{{!}}NOLP |
|gene_description=nucleolar protein 4 | |gene_description=nucleolar protein 4 | ||
|gene_id=8715 | |gene_id=8715 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:7870 | |hgnc_mgi_id=HGNC:7870 | ||
|nearest_ensembl=ENSG00000101746 | |nearest_ensembl=ENSG00000101746 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001353237 |
|nearest_refseq=NM_003787 | |nearest_refseq=NM_003787 | ||
|nearest_unigene=Hs.514795 | |nearest_unigene=Hs.514795 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=34224772 | |start=34224772 | ||
|start_of_center_position=34224781 | |start_of_center_position=34224781 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000588355 | + | |transcript_name=ENST00000588355.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_171620.1 | |tss_id=hg_171620.1 | ||
Revision as of 19:46, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34224781 |
|---|---|
| End of the center position in the TSS region: | 34224782 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000588355.1 |
|---|---|
| Distance: | -120 |
| Num_trans: | 11 |
| All_trans: | ENST00000588355.1:-120 ENST00000261592.10:-123 NM_003787:-123 NM_001384469:-123 NM_001384470:-123 NM_001384467:-123 NM_001384473:-123 NM_001384468:-123 NM_001384471:-123 NM_001384472:-123 ENST00000590846.1:-162 |
TATA-Box annotation
| Distance to TSS: | -1230 |
|---|---|
| Nearest PromoterID: | NM_001353237 |
| Entrez ID: | 8715 |
| Nearest Unigene: | Hs.514795 |
| Nearest Refseq: | NM_003787 |
| Nearest Ensembl: | ENSG00000101746 |
| Gene Name: | nucleolar protein 4 |
| Gene Alias: | CT125|HRIHFB2255|NOLP |
| Gene Description: | nucleolar protein 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
