Difference between revisions of "TSS:Hg 171625.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HRIHFB2255= | |HRIHFB2255= | ||
|NOLP= | |NOLP= | ||
| − | |all_trans=ENST00000588355.1:0 | + | |all_trans=ENST00000261592.10:0 ENST00000588355.1:0 NM_003787:0 NM_001384469:0 NM_001384470:0 NM_001384467:0 NM_001384473:0 NM_001384468:0 NM_001384471:0 NM_001384472:0 ENST00000590846.1:-16 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| Line 11: | Line 11: | ||
|entrez_id=8715 | |entrez_id=8715 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=CT125 | + | |gene_alias=CT125{{!}}HRIHFB2255{{!}}NOLP |
|gene_description=nucleolar protein 4 | |gene_description=nucleolar protein 4 | ||
|gene_id=8715 | |gene_id=8715 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:7870 | |hgnc_mgi_id=HGNC:7870 | ||
|nearest_ensembl=ENSG00000101746 | |nearest_ensembl=ENSG00000101746 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001353237 |
|nearest_refseq=NM_003787 | |nearest_refseq=NM_003787 | ||
|nearest_unigene=Hs.514795 | |nearest_unigene=Hs.514795 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=34224900 | |start=34224900 | ||
|start_of_center_position=34224918 | |start_of_center_position=34224918 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000588355.1 | + | |transcript_name=ENST00000261592.10 ENST00000588355.1 NM_003787 NM_001384469 NM_001384470 NM_001384467 NM_001384473 NM_001384468 NM_001384471 NM_001384472 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_171625.1 | |tss_id=hg_171625.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O94818 |
}} | }} | ||
Revision as of 19:46, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34224918 |
|---|---|
| End of the center position in the TSS region: | 34224919 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000261592.10 ENST00000588355.1 NM_003787 NM_001384469 NM_001384470 NM_001384467 NM_001384473 NM_001384468 NM_001384471 NM_001384472 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000261592.10:0 ENST00000588355.1:0 NM_003787:0 NM_001384469:0 NM_001384470:0 NM_001384467:0 NM_001384473:0 NM_001384468:0 NM_001384471:0 NM_001384472:0 ENST00000590846.1:-16 |
TATA-Box annotation
| Distance to TSS: | -1367 |
|---|---|
| Nearest PromoterID: | NM_001353237 |
| Entrez ID: | 8715 |
| Nearest Unigene: | Hs.514795 |
| Nearest Refseq: | NM_003787 |
| Nearest Ensembl: | ENSG00000101746 |
| Gene Name: | nucleolar protein 4 |
| Gene Alias: | CT125|HRIHFB2255|NOLP |
| Gene Description: | nucleolar protein 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
