Difference between revisions of "TSS:Hg 171645.1"
From referenceTSS
| Line 2: | Line 2: | ||
|ZNF397OS= | |ZNF397OS= | ||
|ZNF917= | |ZNF917= | ||
| − | |all_trans=ENST00000589178.5 | + | |all_trans=ENST00000589178.5:-28 AK131291:-28 ENST00000586922.2:-32 AK128697:-32 AY234408:-39 ENST00000592278.1:-52 ENST00000333206.10:-60 ENST00000592211.1:-60 NM_001166012:-60 NM_001112734:-60 ENST00000420878.7:-63 ENST00000588832.1:-63 AK303447:-63 ENST00000610712.1:-76 NM_001288711:-76 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-28 | |distance=-28 | ||
| − | |distance_to_tss= | + | |distance_to_tss=65 |
|end=35290169 | |end=35290169 | ||
|end_of_center_position=35290164 | |end_of_center_position=35290164 | ||
|entrez_id=100101467 | |entrez_id=100101467 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=ZNF-WYM | + | |gene_alias=ZNF-WYM{{!}}ZNF397OS{{!}}ZNF917 |
|gene_description=zinc finger and SCAN domain containing 30 | |gene_description=zinc finger and SCAN domain containing 30 | ||
|gene_id=100101467 | |gene_id=100101467 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:33517 | |hgnc_mgi_id=HGNC:33517 | ||
|nearest_ensembl=ENSG00000186814 | |nearest_ensembl=ENSG00000186814 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001166012 |
|nearest_refseq=NM_001112734 | |nearest_refseq=NM_001112734 | ||
|nearest_unigene=Hs.619840 | |nearest_unigene=Hs.619840 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=35290158 | |start=35290158 | ||
|start_of_center_position=35290163 | |start_of_center_position=35290163 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000589178.5 | + | |transcript_name=ENST00000589178.5 AK131291 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_171645.1 | |tss_id=hg_171645.1 | ||
Revision as of 19:47, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35290163 |
|---|---|
| End of the center position in the TSS region: | 35290164 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000589178.5 AK131291 |
|---|---|
| Distance: | -28 |
| Num_trans: | 15 |
| All_trans: | ENST00000589178.5:-28 AK131291:-28 ENST00000586922.2:-32 AK128697:-32 AY234408:-39 ENST00000592278.1:-52 ENST00000333206.10:-60 ENST00000592211.1:-60 NM_001166012:-60 NM_001112734:-60 ENST00000420878.7:-63 ENST00000588832.1:-63 AK303447:-63 ENST00000610712.1:-76 NM_001288711:-76 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001166012 |
| Entrez ID: | 100101467 |
| Nearest Unigene: | Hs.619840 |
| Nearest Refseq: | NM_001112734 |
| Nearest Ensembl: | ENSG00000186814 |
| Gene Name: | zinc finger and SCAN domain containing 30 |
| Gene Alias: | ZNF-WYM|ZNF397OS|ZNF917 |
| Gene Description: | zinc finger and SCAN domain containing 30 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
