Difference between revisions of "TSS:Hg 17172.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000652846.1:0 ENST00000655169.1:0 NR_135298:0 NR_135299:0 EU154351:0 EU154352:0 MA265472:0 AK092969:0 ENST00000487977.2:-19 LF321474:-377 MA557051:-377 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 9: | Line 9: | ||
|entrez_id=100128537 | |entrez_id=100128537 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias= | + | |gene_alias=C1orf132 |
| − | |gene_description= | + | |gene_description=MIR29B2 and MIR29C host gene |
|gene_id=100128537 | |gene_id=100128537 | ||
| − | |gene_name= | + | |gene_name=MIR29B2 and MIR29C host gene |
|gene_source=HGNC:32018 | |gene_source=HGNC:32018 | ||
| − | |gene_symbol= | + | |gene_symbol=MIR29B2CHG |
|gene_synonyms=FLJ35650 | |gene_synonyms=FLJ35650 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_135298 | |nearest_refseq=NR_135298 | ||
|nearest_unigene=Hs.445414 | |nearest_unigene=Hs.445414 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=207822689 | |start=207822689 | ||
|start_of_center_position=207822699 | |start_of_center_position=207822699 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=81(CCTTTTAAAATT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000652846.1 ENST00000655169.1 NR_135298 NR_135299 EU154351 EU154352 MA265472 AK092969 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_17172.1 | |tss_id=hg_17172.1 | ||
Revision as of 19:48, 16 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 207822699 |
|---|---|
| End of the center position in the TSS region: | 207822700 |
Gene and protein annotation
|
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Transcript annotation
| Transcript_name: | ENST00000652846.1 ENST00000655169.1 NR_135298 NR_135299 EU154351 EU154352 MA265472 AK092969 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000652846.1:0 ENST00000655169.1:0 NR_135298:0 NR_135299:0 EU154351:0 EU154352:0 MA265472:0 AK092969:0 ENST00000487977.2:-19 LF321474:-377 MA557051:-377 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NR_135299 |
| Entrez ID: | 100128537 |
| Nearest Unigene: | Hs.445414 |
| Nearest Refseq: | NR_135298 |
| Nearest Ensembl: | |
| Gene Name: | MIR29B2 and MIR29C host gene |
| Gene Alias: | C1orf132 |
| Gene Description: | MIR29B2 and MIR29C host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 81(CCTTTTAAAATT,+,0.00) |
