Difference between revisions of "TSS:Hg 181556.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SNRPD1= | |SNRPD1= | ||
|Sm-D2= | |Sm-D2= | ||
| − | |all_trans=ENST00000585392.2:0 ENST00000587367.5:0 ENST00000391932.7:0 ENST00000590212.1:0 | + | |all_trans=ENST00000585392.2:0 ENST00000342669.8:0 ENST00000587367.5:0 ENST00000391932.7:0 ENST00000590212.1:0 NM_001369752:0 NM_001369751:0 AK291912:0 U15008:0 BC000486:2 NM_177542:-24 ENST00000588599.5:145 ENST00000588301.5:-348 NM_004597:-348 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=11 |
|end=45691968 | |end=45691968 | ||
|end_of_center_position=45691942 | |end_of_center_position=45691942 | ||
|entrez_id=6633 | |entrez_id=6633 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=SMD2 | + | |gene_alias=SMD2{{!}}SNRPD1{{!}}Sm-D2 |
|gene_description=small nuclear ribonucleoprotein D2 polypeptide | |gene_description=small nuclear ribonucleoprotein D2 polypeptide | ||
|gene_id=6633 | |gene_id=6633 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:11159 | |hgnc_mgi_id=HGNC:11159 | ||
|nearest_ensembl=ENSG00000125743 | |nearest_ensembl=ENSG00000125743 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001369752 |
|nearest_refseq=NM_004597 | |nearest_refseq=NM_004597 | ||
|nearest_unigene=Hs.515472 | |nearest_unigene=Hs.515472 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=45691915 | |start=45691915 | ||
|start_of_center_position=45691941 | |start_of_center_position=45691941 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000585392.2 ENST00000587367.5 ENST00000391932.7 ENST00000590212.1 | + | |transcript_name=ENST00000585392.2 ENST00000342669.8 ENST00000587367.5 ENST00000391932.7 ENST00000590212.1 NM_001369752 NM_001369751 AK291912 U15008 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_181556.1 | |tss_id=hg_181556.1 | ||
Revision as of 23:34, 16 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 45691941 |
|---|---|
| End of the center position in the TSS region: | 45691942 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000585392.2 ENST00000342669.8 ENST00000587367.5 ENST00000391932.7 ENST00000590212.1 NM_001369752 NM_001369751 AK291912 U15008 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000585392.2:0 ENST00000342669.8:0 ENST00000587367.5:0 ENST00000391932.7:0 ENST00000590212.1:0 NM_001369752:0 NM_001369751:0 AK291912:0 U15008:0 BC000486:2 NM_177542:-24 ENST00000588599.5:145 ENST00000588301.5:-348 NM_004597:-348 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_001369752 |
| Entrez ID: | 6633 |
| Nearest Unigene: | Hs.515472 |
| Nearest Refseq: | NM_004597 |
| Nearest Ensembl: | ENSG00000125743 |
| Gene Name: | small nuclear ribonucleoprotein D2 polypeptide |
| Gene Alias: | SMD2|SNRPD1|Sm-D2 |
| Gene Description: | small nuclear ribonucleoprotein D2 polypeptide |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
