Difference between revisions of "TSS:Hg 190961.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NCRNA00017= | |NCRNA00017= | ||
| − | |all_trans=ENST00000329743.3:5 | + | |all_trans=ENST00000329743.3:5 NR_024482:10 NR_024483:10 ENST00000431923.1:20 AF307448:20 |
|chr=chr22 | |chr=chr22 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 10: | Line 10: | ||
|entrez_id=100130717 | |entrez_id=100130717 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=CECR4 | + | |gene_alias=CECR4{{!}}CECR5-AS1{{!}}NCRNA00017 |
| − | |gene_description= | + | |gene_description=HDHD5 antisense RNA 1 |
|gene_id=100130717 | |gene_id=100130717 | ||
| − | |gene_name= | + | |gene_name=HDHD5 antisense RNA 1 |
|gene_source=HGNC:1842 | |gene_source=HGNC:1842 | ||
| − | |gene_symbol= | + | |gene_symbol=HDHD5-AS1 |
|gene_synonyms=NCRNA00017 | |gene_synonyms=NCRNA00017 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_024482 | |nearest_refseq=NR_024482 | ||
|nearest_unigene=Hs.660066 | |nearest_unigene=Hs.660066 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=17159347 | |start=17159347 | ||
|start_of_center_position=17159363 | |start_of_center_position=17159363 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000329743.3 | + | |transcript_name=ENST00000329743.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_190961.1 | |tss_id=hg_190961.1 | ||
Revision as of 03:11, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17159363 |
|---|---|
| End of the center position in the TSS region: | 17159364 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000329743.3 |
|---|---|
| Distance: | 5 |
| Num_trans: | 5 |
| All_trans: | ENST00000329743.3:5 NR_024482:10 NR_024483:10 ENST00000431923.1:20 AF307448:20 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NR_024483 |
| Entrez ID: | 100130717 |
| Nearest Unigene: | Hs.660066 |
| Nearest Refseq: | NR_024482 |
| Nearest Ensembl: | ENSG00000185837 |
| Gene Name: | HDHD5 antisense RNA 1 |
| Gene Alias: | CECR4|CECR5-AS1|NCRNA00017 |
| Gene Description: | HDHD5 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.145 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
