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Difference between revisions of "TSS:Hg 196294.1"

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Line 3: Line 3:
 
|JM21=
 
|JM21=
 
|PPP1R90=
 
|PPP1R90=
−
|all_trans=ENST00000462730.5:0 ENST00000376619.6:0 ENST00000477528.5:0 ENST00000465269.5:0 ENST00000476625.5:0 ENST00000477561.5:0 NM_006044:0 uc064zam.1:0 uc004dkt.2:0 uc010nig.2:0 uc064zan.1:0 uc064zao.1:0 uc064zap.1:0 AL137696:0 BC005872:0 AK024083:0 AJ011972:0 AB020708:0 BC069243:0 ENST00000334136.9:-15 uc004dks.2:-15 ENST00000483656.5:-19 uc064zal.1:-19 AK295884:44 ENST00000376610.6:-61 uc064zak.1:-61 ENST00000481929.5:65 uc064zaq.1:65 ENST00000441703.5:66 uc064zar.1:66 BC011498:69 ENST00000426196.5:71 uc064zas.1:71 AK095124:72 ENST00000489352.5:86 uc064zat.1:86 AK302926:-130 ENST00000469223.5:-217 uc064zaj.1:-217 ENST00000376643.6:-310 uc064zai.1:-310 ENST00000443563.5:394 uc064zau.1:394 ENST00000440653.1:429 uc064zav.1:429
+
|all_trans=ENST00000462730.5:0 ENST00000376619.6:0 ENST00000477528.5:0 ENST00000465269.5:0 ENST00000334136.11:0 ENST00000476625.5:0 ENST00000646703.1:0 ENST00000477561.5:0 NM_001321231:0 NM_001321228:0 NM_006044:0 NM_001321230:0 NM_001321226:0 NM_001321227:0 NR_135593:0 NR_135592:0 AL137696:0 BC005872:0 AK024083:0 AJ011972:0 AB020708:0 BC069243:0 ENST00000643659.1:12 ENST00000483656.5:-19 ENST00000643374.1:38 AK295884:44 ENST00000644068.1:47 ENST00000376610.6:-61 NM_001321229:-61 ENST00000441703.6:65 ENST00000643934.1:66 BC011498:69 AK095124:72 ENST00000489352.5:86 AK302926:-130 ENST00000469223.5:-217 ENST00000376643.6:-310 ENST00000443563.5:394 ENST00000440653.1:429
 
|chr=chrX
 
|chr=chrX
 
|cpg_percent=0.09
 
|cpg_percent=0.09
 
|distance=0
 
|distance=0
−
|distance_to_tss=49
+
|distance_to_tss=-2
 
|end=48802121
 
|end=48802121
 
|end_of_center_position=48802066
 
|end_of_center_position=48802066
 
|entrez_id=10013
 
|entrez_id=10013
 
|gc_percent=0.681592
 
|gc_percent=0.681592
−
|gene_alias=CPBHM
+
|gene_alias=CPBHM{{!}}HD6{{!}}JM21{{!}}PPP1R90
 
|gene_description=histone deacetylase 6
 
|gene_description=histone deacetylase 6
 
|gene_id=10013
 
|gene_id=10013
Line 22: Line 22:
 
|hgnc_mgi_id=HGNC:14064
 
|hgnc_mgi_id=HGNC:14064
 
|nearest_ensembl=ENSG00000094631
 
|nearest_ensembl=ENSG00000094631
−
|nearest_promoter_id=NR_135593
+
|nearest_promoter_id=NM_001321226
 
|nearest_refseq=NM_006044
 
|nearest_refseq=NM_006044
 
|nearest_unigene=Hs.6764
 
|nearest_unigene=Hs.6764
−
|num_trans=45
+
|num_trans=39
 
|species=human
 
|species=human
 
|start=48802009
 
|start=48802009
 
|start_of_center_position=48802065
 
|start_of_center_position=48802065
 
|strand=+
 
|strand=+
−
|tata_box="88(GGCCCGATAAGG,-,0.00)"
+
|tata_box=88(GGCCCGATAAGG,-,0.00)
−
|transcript_name=ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000476625.5 ENST00000477561.5 NM_006044 uc064zam.1 uc004dkt.2 uc010nig.2 uc064zan.1 uc064zao.1 uc064zap.1 AL137696 BC005872 AK024083 AJ011972 AB020708 BC069243
+
|transcript_name=ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000334136.11 ENST00000476625.5 ENST00000646703.1 ENST00000477561.5 NM_001321231 NM_001321228 NM_006044 NM_001321230 NM_001321226 NM_001321227 NR_135593 NR_135592 AL137696 BC005872 AK024083 AJ011972 AB020708 BC069243
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_196294.1
 
|tss_id=hg_196294.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=A0A024QZ26 B3KNA1 Q9NSW6 Q9UBN7
+
|uniprot_id=A0A024QZ26 A0A2R8Y5Z4 A0A2R8YCS4 B3KNA1 Q9BRX7 Q9NSW6 Q9UBN7
 
}}
 
}}

Revision as of 05:14, 17 June 2021

Basic information about the TSS

TSS ID:hg_196294.1
Species:human
Chr:chrX
TSS Classification:yes
Start:48802009
End:48802121
Strand:+
TSS Score:1
Start of the center position in the TSS region:48802065
End of the center position in the TSS region:48802066



Gene and protein annotation

Transcript_name:ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000334136.11 ENST00000476625.5 ENST00000646703.1 ENST00000477561.5 NM_001321231 NM_001321228 NM_006044 NM_001321230 NM_001321226 NM_001321227 NR_135593 NR_135592 AL137696 BC005872 AK024083 AJ011972 AB020708 BC069243
Distance:0
GeneID:10013
HGNC/MGI_ID:HGNC:14064
UniProt_ID:A0A024QZ26 A0A2R8Y5Z4 A0A2R8YCS4 B3KNA1 Q9BRX7 Q9NSW6 Q9UBN7
Gene_name:histone deacetylase 6
Gene_symbol:HDAC6
Gene_synonyms:FLJ16239 HD6 JM21 KIAA0901 PPP1R90
Gene_source:HGNC:14064



Transcript annotation

Transcript_name:ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000334136.11 ENST00000476625.5 ENST00000646703.1 ENST00000477561.5 NM_001321231 NM_001321228 NM_006044 NM_001321230 NM_001321226 NM_001321227 NR_135593 NR_135592 AL137696 BC005872 AK024083 AJ011972 AB020708 BC069243
Distance:0
Num_trans:39
All_trans:ENST00000462730.5:0 ENST00000376619.6:0 ENST00000477528.5:0 ENST00000465269.5:0 ENST00000334136.11:0 ENST00000476625.5:0 ENST00000646703.1:0 ENST00000477561.5:0 NM_001321231:0 NM_001321228:0 NM_006044:0 NM_001321230:0 NM_001321226:0 NM_001321227:0 NR_135593:0 NR_135592:0 AL137696:0 BC005872:0 AK024083:0 AJ011972:0 AB020708:0 BC069243:0 ENST00000643659.1:12 ENST00000483656.5:-19 ENST00000643374.1:38 AK295884:44 ENST00000644068.1:47 ENST00000376610.6:-61 NM_001321229:-61 ENST00000441703.6:65 ENST00000643934.1:66 BC011498:69 AK095124:72 ENST00000489352.5:86 AK302926:-130 ENST00000469223.5:-217 ENST00000376643.6:-310 ENST00000443563.5:394 ENST00000440653.1:429



TATA-Box annotation

Distance to TSS:-2
Nearest PromoterID:NM_001321226
Entrez ID:10013
Nearest Unigene:Hs.6764
Nearest Refseq:NM_006044
Nearest Ensembl:ENSG00000094631
Gene Name:histone deacetylase 6
Gene Alias:CPBHM|HD6|JM21|PPP1R90
Gene Description:histone deacetylase 6
Gene Type:protein-coding
CpG%:0.09
GC%:0.681592
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):88(GGCCCGATAAGG,-,0.00)
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