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Difference between revisions of "TSS:Hg 196295.1"

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Line 3: Line 3:
 
|JM21=
 
|JM21=
 
|PPP1R90=
 
|PPP1R90=
−
|all_trans=ENST00000481929.5:0 ENST00000441703.5:0 ENST00000426196.5:0 ENST00000489352.5:0 uc064zaq.1:0 uc064zar.1:0 uc064zas.1:0 uc064zat.1:0 AK295884:0 BC011498:0 AK095124:0 ENST00000477561.5:-49 uc064zap.1:-49 BC069243:-57 AB020708:-58 ENST00000476625.5:-77 uc064zao.1:-77 NM_006044:-79 AJ011972:-79 AK024083:-85 ENST00000465269.5:-95 uc064zan.1:-95 BC005872:-95 ENST00000477528.5:-104 uc010nig.2:-104 AL137696:-104 ENST00000376619.6:-125 uc004dkt.2:-125 ENST00000462730.5:-143 uc064zam.1:-143 ENST00000334136.9:-164 uc004dks.2:-164 ENST00000483656.5:-168 uc064zal.1:-168 ENST00000376610.6:-210 uc064zak.1:-210 AK302926:-279 ENST00000443563.5:298 uc064zau.1:298 ENST00000440653.1:333 uc064zav.1:333 ENST00000469223.5:-366 uc064zaj.1:-366 ENST00000376643.6:-459 uc064zai.1:-459 KJ902051:474 BT006649:476 AB385398:476 AF132609:476 BC013737:494
+
|all_trans=ENST00000643374.1:0 ENST00000644068.1:0 ENST00000441703.6:0 ENST00000643934.1:0 ENST00000489352.5:0 AK295884:0 BC011498:0 AK095124:0 ENST00000643659.1:-26 ENST00000477561.5:-49 BC069243:-57 AB020708:-58 ENST00000646703.1:-75 ENST00000476625.5:-77 AJ011972:-79 AK024083:-85 ENST00000334136.11:-92 NM_001321231:-92 NM_001321228:-92 NM_006044:-92 NM_001321230:-92 NM_001321226:-92 NM_001321227:-92 NR_135593:-92 NR_135592:-92 ENST00000465269.5:-95 BC005872:-95 ENST00000477528.5:-104 AL137696:-104 ENST00000376619.6:-125 ENST00000462730.5:-143 ENST00000483656.5:-168 ENST00000376610.6:-210 NM_001321229:-210 AK302926:-279 ENST00000443563.5:298 ENST00000440653.1:333 ENST00000469223.5:-366 NR_135591:446 ENST00000376643.6:-459 KJ902051:474 BT006649:476 AB385398:476 AF132609:476 BC013737:494
 
|chr=chrX
 
|chr=chrX
 
|cpg_percent=0.08
 
|cpg_percent=0.08
 
|distance=0
 
|distance=0
−
|distance_to_tss=172
+
|distance_to_tss=121
 
|end=48802217
 
|end=48802217
 
|end_of_center_position=48802188
 
|end_of_center_position=48802188
 
|entrez_id=10013
 
|entrez_id=10013
 
|gc_percent=0.626866
 
|gc_percent=0.626866
−
|gene_alias=CPBHM
+
|gene_alias=CPBHM{{!}}HD6{{!}}JM21{{!}}PPP1R90
 
|gene_description=histone deacetylase 6
 
|gene_description=histone deacetylase 6
 
|gene_id=10013
 
|gene_id=10013
Line 22: Line 22:
 
|hgnc_mgi_id=HGNC:14064
 
|hgnc_mgi_id=HGNC:14064
 
|nearest_ensembl=ENSG00000094631
 
|nearest_ensembl=ENSG00000094631
−
|nearest_promoter_id=NR_135593
+
|nearest_promoter_id=NR_135592
 
|nearest_refseq=NM_006044
 
|nearest_refseq=NM_006044
 
|nearest_unigene=Hs.6764
 
|nearest_unigene=Hs.6764
−
|num_trans=50
+
|num_trans=45
 
|species=human
 
|species=human
 
|start=48802158
 
|start=48802158
 
|start_of_center_position=48802187
 
|start_of_center_position=48802187
 
|strand=+
 
|strand=+
−
|tata_box="-35(GGCCCGATAAGG,-,0.00)"
+
|tata_box=-35(GGCCCGATAAGG,-,0.00)
−
|transcript_name=ENST00000481929.5 ENST00000441703.5 ENST00000426196.5 ENST00000489352.5 uc064zaq.1 uc064zar.1 uc064zas.1 uc064zat.1 AK295884 BC011498 AK095124
+
|transcript_name=ENST00000643374.1 ENST00000644068.1 ENST00000441703.6 ENST00000643934.1 ENST00000489352.5 AK295884 BC011498 AK095124
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_196295.1
 
|tss_id=hg_196295.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=B3KT76 B4DJ18 E7EPS2 E9PEH1
+
|uniprot_id=A0A024QZ26 A0A2R8Y5Z4 A0A2R8YDE6 B3KT76 B4DJ18 Q9BRX7
 
}}
 
}}

Revision as of 05:14, 17 June 2021

Basic information about the TSS

TSS ID:hg_196295.1
Species:human
Chr:chrX
TSS Classification:yes
Start:48802158
End:48802217
Strand:+
TSS Score:1
Start of the center position in the TSS region:48802187
End of the center position in the TSS region:48802188



Gene and protein annotation

Transcript_name:ENST00000643374.1 ENST00000644068.1 ENST00000441703.6 ENST00000643934.1 ENST00000489352.5 AK295884 BC011498 AK095124
Distance:0
GeneID:10013
HGNC/MGI_ID:HGNC:14064
UniProt_ID:A0A024QZ26 A0A2R8Y5Z4 A0A2R8YDE6 B3KT76 B4DJ18 Q9BRX7
Gene_name:histone deacetylase 6
Gene_symbol:HDAC6
Gene_synonyms:FLJ16239 HD6 JM21 KIAA0901 PPP1R90
Gene_source:HGNC:14064



Transcript annotation

Transcript_name:ENST00000643374.1 ENST00000644068.1 ENST00000441703.6 ENST00000643934.1 ENST00000489352.5 AK295884 BC011498 AK095124
Distance:0
Num_trans:45
All_trans:ENST00000643374.1:0 ENST00000644068.1:0 ENST00000441703.6:0 ENST00000643934.1:0 ENST00000489352.5:0 AK295884:0 BC011498:0 AK095124:0 ENST00000643659.1:-26 ENST00000477561.5:-49 BC069243:-57 AB020708:-58 ENST00000646703.1:-75 ENST00000476625.5:-77 AJ011972:-79 AK024083:-85 ENST00000334136.11:-92 NM_001321231:-92 NM_001321228:-92 NM_006044:-92 NM_001321230:-92 NM_001321226:-92 NM_001321227:-92 NR_135593:-92 NR_135592:-92 ENST00000465269.5:-95 BC005872:-95 ENST00000477528.5:-104 AL137696:-104 ENST00000376619.6:-125 ENST00000462730.5:-143 ENST00000483656.5:-168 ENST00000376610.6:-210 NM_001321229:-210 AK302926:-279 ENST00000443563.5:298 ENST00000440653.1:333 ENST00000469223.5:-366 NR_135591:446 ENST00000376643.6:-459 KJ902051:474 BT006649:476 AB385398:476 AF132609:476 BC013737:494



TATA-Box annotation

Distance to TSS:121
Nearest PromoterID:NR_135592
Entrez ID:10013
Nearest Unigene:Hs.6764
Nearest Refseq:NM_006044
Nearest Ensembl:ENSG00000094631
Gene Name:histone deacetylase 6
Gene Alias:CPBHM|HD6|JM21|PPP1R90
Gene Description:histone deacetylase 6
Gene Type:protein-coding
CpG%:0.08
GC%:0.626866
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-35(GGCCCGATAAGG,-,0.00)
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