Difference between revisions of "TSS:Hg 19980.1"
From referenceTSS
| Line 4: | Line 4: | ||
|RNF162C= | |RNF162C= | ||
|TIS11D= | |TIS11D= | ||
| − | |all_trans=ENST00000623515 | + | |all_trans=ENST00000623515.2:358 NR_027251:359 BC032412:489 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 13: | Line 13: | ||
|entrez_id=678 | |entrez_id=678 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=BRF2 | + | |gene_alias=BRF2{{!}}ERF-2{{!}}ERF2{{!}}RNF162C{{!}}TIS11D |
|gene_description=ZFP36 ring finger protein like 2 | |gene_description=ZFP36 ring finger protein like 2 | ||
|gene_id=100129726 | |gene_id=100129726 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_006887 | |nearest_refseq=NM_006887 | ||
|nearest_unigene=Hs.503093 | |nearest_unigene=Hs.503093 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=43226831 | |start=43226831 | ||
|start_of_center_position=43226841 | |start_of_center_position=43226841 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000623515 | + | |transcript_name=ENST00000623515.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_19980.1 | |tss_id=hg_19980.1 | ||
Revision as of 06:34, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 43226841 |
|---|---|
| End of the center position in the TSS region: | 43226842 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623515.2 |
|---|---|
| Distance: | 358 |
| Num_trans: | 3 |
| All_trans: | ENST00000623515.2:358 NR_027251:359 BC032412:489 |
TATA-Box annotation
| Distance to TSS: | -236 |
|---|---|
| Nearest PromoterID: | NM_006887 |
| Entrez ID: | 678 |
| Nearest Unigene: | Hs.503093 |
| Nearest Refseq: | NM_006887 |
| Nearest Ensembl: | ENSG00000152518 |
| Gene Name: | long intergenic non-protein coding RNA 1126 |
| Gene Alias: | BRF2|ERF-2|ERF2|RNF162C|TIS11D |
| Gene Description: | ZFP36 ring finger protein like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
