Difference between revisions of "TSS:Hg 200823.1"
From referenceTSS
| Line 2: | Line 2: | ||
|EOLA1= | |EOLA1= | ||
|FLJ16423= | |FLJ16423= | ||
| − | |all_trans=ENST00000609314.5 | + | |all_trans=ENST00000609314.5:0 AK310119:0 ENST00000651111.1:12 ENST00000608355.1:36 AK310957:89 ENST00000609651.5:96 ENST00000608616.5:125 AK303548:125 ENST00000447209.5:145 ENST00000609161.5:147 ENST00000608342.5:484 |
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-63 |
|end=149540961 | |end=149540961 | ||
|end_of_center_position=149540950 | |end_of_center_position=149540950 | ||
|entrez_id=91966 | |entrez_id=91966 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=CXorf40 | + | |gene_alias=CXorf40{{!}}EOLA1 |
|gene_description=chromosome X open reading frame 40A | |gene_description=chromosome X open reading frame 40A | ||
|gene_id=100131434 | |gene_id=100131434 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:44265 | |hgnc_mgi_id=HGNC:44265 | ||
|nearest_ensembl=ENSG00000197620 | |nearest_ensembl=ENSG00000197620 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001171907 |
|nearest_refseq=NM_178124 | |nearest_refseq=NM_178124 | ||
|nearest_unigene=Hs.458216 | |nearest_unigene=Hs.458216 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=149540937 | |start=149540937 | ||
|start_of_center_position=149540949 | |start_of_center_position=149540949 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000609314.5 | + | |transcript_name=ENST00000609314.5 AK310119 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_200823.1 | |tss_id=hg_200823.1 | ||
Revision as of 06:57, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 149540949 |
|---|---|
| End of the center position in the TSS region: | 149540950 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000609314.5 AK310119 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000609314.5:0 AK310119:0 ENST00000651111.1:12 ENST00000608355.1:36 AK310957:89 ENST00000609651.5:96 ENST00000608616.5:125 AK303548:125 ENST00000447209.5:145 ENST00000609161.5:147 ENST00000608342.5:484 |
TATA-Box annotation
| Distance to TSS: | -63 |
|---|---|
| Nearest PromoterID: | NM_001171907 |
| Entrez ID: | 91966 |
| Nearest Unigene: | Hs.458216 |
| Nearest Refseq: | NM_178124 |
| Nearest Ensembl: | ENSG00000197620 |
| Gene Name: | long intergenic non-protein coding RNA 893 |
| Gene Alias: | CXorf40|EOLA1 |
| Gene Description: | chromosome X open reading frame 40A |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
