Difference between revisions of "TSS:Hg 216953.1"
From referenceTSS
| Line 7: | Line 7: | ||
|alcalpha1= | |alcalpha1= | ||
|alcalpha2= | |alcalpha2= | ||
| − | |all_trans= | + | |all_trans=NM_001302883:90 NM_014944:90 AB020718:90 LF383932:124 MA619509:124 AF438482:124 LF211968:218 MA447545:218 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 16: | Line 16: | ||
|entrez_id=22883 | |entrez_id=22883 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=ALC-ALPHA | + | |gene_alias=ALC-ALPHA{{!}}CDHR12{{!}}CST-1{{!}}CSTN1{{!}}PIK3CD{{!}}XB31alpha{{!}}alcalpha1{{!}}alcalpha2 |
|gene_description=calsyntenin 1 | |gene_description=calsyntenin 1 | ||
|gene_id=22883 | |gene_id=22883 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:17447 | |hgnc_mgi_id=HGNC:17447 | ||
|nearest_ensembl=ENSG00000171603 | |nearest_ensembl=ENSG00000171603 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001302883 |
|nearest_refseq=NM_014944 | |nearest_refseq=NM_014944 | ||
|nearest_unigene=Hs.29665 | |nearest_unigene=Hs.29665 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=9824615 | |start=9824615 | ||
|start_of_center_position=9824615 | |start_of_center_position=9824615 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001302883 NM_014944 AB020718 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_216953.1 | |tss_id=hg_216953.1 | ||
Revision as of 07:45, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9824615 |
|---|---|
| End of the center position in the TSS region: | 9824616 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001302883 NM_014944 AB020718 |
|---|---|
| Distance: | 90 |
| Num_trans: | 8 |
| All_trans: | NM_001302883:90 NM_014944:90 AB020718:90 LF383932:124 MA619509:124 AF438482:124 LF211968:218 MA447545:218 |
TATA-Box annotation
| Distance to TSS: | -90 |
|---|---|
| Nearest PromoterID: | NM_001302883 |
| Entrez ID: | 22883 |
| Nearest Unigene: | Hs.29665 |
| Nearest Refseq: | NM_014944 |
| Nearest Ensembl: | ENSG00000171603 |
| Gene Name: | calsyntenin 1 |
| Gene Alias: | ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 |
| Gene Description: | calsyntenin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
