Difference between revisions of "TSS:Hg 219496.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RET/PCM-1= | |RET/PCM-1= | ||
| − | |all_trans=ENST00000524226 | + | |all_trans=ENST00000524226.5:7 BC133052:7 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=7 | |distance=7 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1749 |
|end=17924737 | |end=17924737 | ||
|end_of_center_position=17924737 | |end_of_center_position=17924737 | ||
|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4{{!}}RET/PCM-1 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8727 | |hgnc_mgi_id=HGNC:8727 | ||
|nearest_ensembl=ENSG00000078674 | |nearest_ensembl=ENSG00000078674 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001352656 |
|nearest_refseq=NM_006197 | |nearest_refseq=NM_006197 | ||
|nearest_unigene=Hs.491148 | |nearest_unigene=Hs.491148 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=17924736 | |start=17924736 | ||
|start_of_center_position=17924736 | |start_of_center_position=17924736 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000524226 | + | |transcript_name=ENST00000524226.5 BC133052 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_219496.1 | |tss_id=hg_219496.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A2RUU9 | + | |uniprot_id=A0A4W8VX11 A2RUU9 |
}} | }} | ||
Revision as of 08:14, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17924736 |
|---|---|
| End of the center position in the TSS region: | 17924737 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000524226.5 BC133052 |
|---|---|
| Distance: | 7 |
| Num_trans: | 2 |
| All_trans: | ENST00000524226.5:7 BC133052:7 |
TATA-Box annotation
| Distance to TSS: | 1749 |
|---|---|
| Nearest PromoterID: | NM_001352656 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4|RET/PCM-1 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
