Difference between revisions of "TSS:Hg 219688.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AB590228:0 DQ893309:3 EU176553:3 CU674022:4 BT007379:5 CR457046:5 ENST00000528296.5:9 ENST00000529920.5 | + | |all_trans=AB590228:0 DQ893309:3 EU176553:3 CU674022:4 BT007379:5 CR457046:5 ENST00000528296.5:9 ENST00000529920.5:-9 BC007935:-9 BC030151:-9 ENST00000533397.5:-19 ENST00000531975.5:77 LP997127:143 LY480927:143 LY495824:143 LY496511:143 LY497149:143 LY499157:143 LY500367:143 LZ238771:143 MP073629:143 MP080402:143 MS868989:143 MS880472:143 MS884336:143 MS885486:143 MS994519:143 MA822648:143 LY616535:143 MB473037:143 LP951752:143 LQ724883:143 LY480804:143 LY495674:143 LY496301:143 LY496956:143 LY498887:143 LY500359:143 LZ238512:143 MS868839:143 MS880202:143 MS884143:143 MS885478:143 MS994309:143 MA822312:143 LY616276:143 MB472806:143 ENST00000526668.5:175 BC012197:-210 BC000047:218 BC013104:-244 BC000077:-247 ENST00000532702.1:-250 ENST00000394920.6:-255 ENST00000529163.5:-256 ENST00000528957.6:-256 NM_001317782:-256 NM_000973:-256 NM_001317771:-256 NM_033301:-256 AK301073:-256 D28421:-256 AK289459:-262 ENST00000531767.1:-286 BC093064:-286 ENST00000525232.5:-287 AK309619:-287 ENST00000527914.5:-289 ENST00000262584.7:-453 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| Line 18: | Line 18: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:10368 | |hgnc_mgi_id=HGNC:10368 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000283764 |
|nearest_promoter_id=NR_106909 | |nearest_promoter_id=NR_106909 | ||
|nearest_refseq=NR_106909 | |nearest_refseq=NR_106909 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=69 |
|species=human | |species=human | ||
|start=144792133 | |start=144792133 | ||
Revision as of 08:16, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 144792133 |
|---|---|
| End of the center position in the TSS region: | 144792134 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB590228 |
|---|---|
| Distance: | 0 |
| Num_trans: | 69 |
| All_trans: | AB590228:0 DQ893309:3 EU176553:3 CU674022:4 BT007379:5 CR457046:5 ENST00000528296.5:9 ENST00000529920.5:-9 BC007935:-9 BC030151:-9 ENST00000533397.5:-19 ENST00000531975.5:77 LP997127:143 LY480927:143 LY495824:143 LY496511:143 LY497149:143 LY499157:143 LY500367:143 LZ238771:143 MP073629:143 MP080402:143 MS868989:143 MS880472:143 MS884336:143 MS885486:143 MS994519:143 MA822648:143 LY616535:143 MB473037:143 LP951752:143 LQ724883:143 LY480804:143 LY495674:143 LY496301:143 LY496956:143 LY498887:143 LY500359:143 LZ238512:143 MS868839:143 MS880202:143 MS884143:143 MS885478:143 MS994309:143 MA822312:143 LY616276:143 MB472806:143 ENST00000526668.5:175 BC012197:-210 BC000047:218 BC013104:-244 BC000077:-247 ENST00000532702.1:-250 ENST00000394920.6:-255 ENST00000529163.5:-256 ENST00000528957.6:-256 NM_001317782:-256 NM_000973:-256 NM_001317771:-256 NM_033301:-256 AK301073:-256 D28421:-256 AK289459:-262 ENST00000531767.1:-286 BC093064:-286 ENST00000525232.5:-287 AK309619:-287 ENST00000527914.5:-289 ENST00000262584.7:-453 |
TATA-Box annotation
| Distance to TSS: | -143 |
|---|---|
| Nearest PromoterID: | NR_106909 |
| Entrez ID: | 102465978 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106909 |
| Nearest Ensembl: | ENSG00000283764 |
| Gene Name: | ribosomal protein L8 |
| Gene Alias: | hsa-mir-6850 |
| Gene Description: | microRNA 6850 |
| Gene Type: | ncRNA |
| CpG%: | 0.16 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
