Difference between revisions of "TSS:Hg 219752.1"
From referenceTSS
| Line 6: | Line 6: | ||
|IBMPFD1= | |IBMPFD1= | ||
|TERA= | |TERA= | ||
| − | |all_trans=ENST00000493886.5 | + | |all_trans=LF211620:0 MA447197:0 ENST00000493886.5:-8 BC122550:-8 BC121794:-8 BC110913:-11 ENST00000678650.1:-20 ENST00000679901.1:-20 FJ224344:-26 AF100752:-26 FJ224352:-26 ENST00000678018.1:-27 ENST00000679800.1:-50 ENST00000677257.1:-60 BC096751:-60 ENST00000679862.1:-70 ENST00000676836.2:-75 ENST00000679902.1:-82 ENST00000679599.1:-82 AK312310:-82 ENST00000678465.1:-84 ENST00000358901.11:-84 ENST00000681335.1:-84 ENST00000680916.1:-84 ENST00000681690.1:-84 ENST00000480327.2:-84 ENST00000680079.1:-84 ENST00000681386.1:-84 NM_007126:-84 ENST00000679392.1:-94 ENST00000680575.1:-94 ENST00000680108.1:-94 ENST00000679204.2:99 BC012195:-99 BC017171:-99 BC021055:-99 ENST00000679647.1:-104 ENST00000448530.6:-127 NM_001354927:-127 AB385152:184 NM_001354928:233 ENST00000417448.2:336 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=84 |
|end=35072541 | |end=35072541 | ||
|end_of_center_position=35072541 | |end_of_center_position=35072541 | ||
|entrez_id=7415 | |entrez_id=7415 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias= | + | |gene_alias=CDC48{{!}}TERA{{!}}p97 |
|gene_description=valosin containing protein | |gene_description=valosin containing protein | ||
|gene_id=7415 | |gene_id=7415 | ||
| − | |gene_name= | + | |gene_name=VCP |
|gene_source=HGNC:12666 | |gene_source=HGNC:12666 | ||
|gene_symbol=VCP | |gene_symbol=VCP | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_007126 | |nearest_refseq=NM_007126 | ||
|nearest_unigene=Hs.529782 | |nearest_unigene=Hs.529782 | ||
| − | |num_trans= | + | |num_trans=42 |
|p97= | |p97= | ||
|species=human | |species=human | ||
| Line 34: | Line 34: | ||
|start_of_center_position=35072540 | |start_of_center_position=35072540 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF211620 MA447197 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_219752.1 | |tss_id=hg_219752.1 | ||
Latest revision as of 08:17, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35072540 |
|---|---|
| End of the center position in the TSS region: | 35072541 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF211620 MA447197 |
|---|---|
| Distance: | 0 |
| Num_trans: | 42 |
| All_trans: | LF211620:0 MA447197:0 ENST00000493886.5:-8 BC122550:-8 BC121794:-8 BC110913:-11 ENST00000678650.1:-20 ENST00000679901.1:-20 FJ224344:-26 AF100752:-26 FJ224352:-26 ENST00000678018.1:-27 ENST00000679800.1:-50 ENST00000677257.1:-60 BC096751:-60 ENST00000679862.1:-70 ENST00000676836.2:-75 ENST00000679902.1:-82 ENST00000679599.1:-82 AK312310:-82 ENST00000678465.1:-84 ENST00000358901.11:-84 ENST00000681335.1:-84 ENST00000680916.1:-84 ENST00000681690.1:-84 ENST00000480327.2:-84 ENST00000680079.1:-84 ENST00000681386.1:-84 NM_007126:-84 ENST00000679392.1:-94 ENST00000680575.1:-94 ENST00000680108.1:-94 ENST00000679204.2:99 BC012195:-99 BC017171:-99 BC021055:-99 ENST00000679647.1:-104 ENST00000448530.6:-127 NM_001354927:-127 AB385152:184 NM_001354928:233 ENST00000417448.2:336 |
TATA-Box annotation
| Distance to TSS: | 84 |
|---|---|
| Nearest PromoterID: | NM_007126 |
| Entrez ID: | 7415 |
| Nearest Unigene: | Hs.529782 |
| Nearest Refseq: | NM_007126 |
| Nearest Ensembl: | ENSG00000165280 |
| Gene Name: | VCP |
| Gene Alias: | CDC48|TERA|p97 |
| Gene Description: | valosin containing protein |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
