Difference between revisions of "TSS:Hg 219935.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000372159.7:2 ENST00000372153.5:2 ENST00000310532.6:2 ENST00000480876.2:2 ENST00000482620.1:2 NM_022779:2 | + | |all_trans=ENST00000372159.7:2 ENST00000372153.5:2 ENST00000310532.6:2 ENST00000480876.2:2 ENST00000482620.1:2 NM_022779:2 NM_001322340:2 NM_138620:2 NM_001322344:2 AF427339:2 AF335568:2 AF335569:2 AK027484:2 AF335567:2 BC156832:154 ENST00000438527.7:376 BC012726:376 AK304715:387 AK225350:417 AK027002:419 NM_001322341:420 NR_136309:420 AK225121:446 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:16715 | |hgnc_mgi_id=HGNC:16715 | ||
|nearest_ensembl=ENSG00000125485 | |nearest_ensembl=ENSG00000125485 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001322340 |
|nearest_refseq=NM_022779 | |nearest_refseq=NM_022779 | ||
|nearest_unigene=Hs.660767 | |nearest_unigene=Hs.660767 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=132670402 | |start=132670402 | ||
|start_of_center_position=132670402 | |start_of_center_position=132670402 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000372159.7 ENST00000372153.5 ENST00000310532.6 ENST00000480876.2 ENST00000482620.1 NM_022779 NM_138620 | + | |transcript_name=ENST00000372159.7 ENST00000372153.5 ENST00000310532.6 ENST00000480876.2 ENST00000482620.1 NM_022779 NM_001322340 NM_138620 NM_001322344 AF427339 AF335568 AF335569 AK027484 AF335567 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_219935.1 | |tss_id=hg_219935.1 | ||
Revision as of 08:19, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 132670402 |
|---|---|
| End of the center position in the TSS region: | 132670403 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000372159.7 ENST00000372153.5 ENST00000310532.6 ENST00000480876.2 ENST00000482620.1 NM_022779 NM_001322340 NM_138620 NM_001322344 AF427339 AF335568 AF335569 AK027484 AF335567 |
|---|---|
| Distance: | 2 |
| Num_trans: | 23 |
| All_trans: | ENST00000372159.7:2 ENST00000372153.5:2 ENST00000310532.6:2 ENST00000480876.2:2 ENST00000482620.1:2 NM_022779:2 NM_001322340:2 NM_138620:2 NM_001322344:2 AF427339:2 AF335568:2 AF335569:2 AK027484:2 AF335567:2 BC156832:154 ENST00000438527.7:376 BC012726:376 AK304715:387 AK225350:417 AK027002:419 NM_001322341:420 NR_136309:420 AK225121:446 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001322340 |
| Entrez ID: | 64794 |
| Nearest Unigene: | Hs.660767 |
| Nearest Refseq: | NM_022779 |
| Nearest Ensembl: | ENSG00000125485 |
| Gene Name: | DEAD-box helicase 31 |
| Gene Alias: | PPP1R25 |
| Gene Description: | DEAD-box helicase 31 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
