Difference between revisions of "TSS:Hg 220177.1"
From referenceTSS
| Line 4: | Line 4: | ||
|LYT10= | |LYT10= | ||
|NF-kB2= | |NF-kB2= | ||
| − | |all_trans= | + | |all_trans=ENST00000601386.5:-14 ENST00000428099.6:-14 NM_001322935:-14 NM_001288724:-14 LF211354:-16 MA446931:-16 ENST00000369966.8:379 BC002844:449 NM_001077494:454 S76638:473 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 13: | Line 13: | ||
|entrez_id=4791 | |entrez_id=4791 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=CVID10 | + | |gene_alias=CVID10{{!}}H2TF1{{!}}LYT-10{{!}}LYT10{{!}}NF-kB2{{!}}p100{{!}}p49/p100{{!}}p52 |
|gene_description=nuclear factor kappa B subunit 2 | |gene_description=nuclear factor kappa B subunit 2 | ||
|gene_id=4791 | |gene_id=4791 | ||
| − | |gene_name=nuclear factor | + | |gene_name=nuclear factor kappa B subunit 2 |
|gene_source=HGNC:7795 | |gene_source=HGNC:7795 | ||
|gene_symbol=NFKB2 | |gene_symbol=NFKB2 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:7795 | |hgnc_mgi_id=HGNC:7795 | ||
|nearest_ensembl=ENSG00000077150 | |nearest_ensembl=ENSG00000077150 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001288724 |
|nearest_refseq=NM_002502 | |nearest_refseq=NM_002502 | ||
|nearest_unigene=Hs.73090 | |nearest_unigene=Hs.73090 | ||
| − | |num_trans= | + | |num_trans=10 |
|p100= | |p100= | ||
|p49/p100= | |p49/p100= | ||
| Line 34: | Line 34: | ||
|start_of_center_position=102394123 | |start_of_center_position=102394123 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000601386.5 ENST00000428099.6 NM_001322935 NM_001288724 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_220177.1 | |tss_id=hg_220177.1 | ||
Revision as of 08:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102394123 |
|---|---|
| End of the center position in the TSS region: | 102394124 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000601386.5 ENST00000428099.6 NM_001322935 NM_001288724 |
|---|---|
| Distance: | -14 |
| Num_trans: | 10 |
| All_trans: | ENST00000601386.5:-14 ENST00000428099.6:-14 NM_001322935:-14 NM_001288724:-14 LF211354:-16 MA446931:-16 ENST00000369966.8:379 BC002844:449 NM_001077494:454 S76638:473 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_001288724 |
| Entrez ID: | 4791 |
| Nearest Unigene: | Hs.73090 |
| Nearest Refseq: | NM_002502 |
| Nearest Ensembl: | ENSG00000077150 |
| Gene Name: | nuclear factor kappa B subunit 2 |
| Gene Alias: | CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 |
| Gene Description: | nuclear factor kappa B subunit 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
