Difference between revisions of "TSS:Hg 227046.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000584252.1:9 | + | |all_trans=ENST00000584252.1:9 NR_148999:9 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=9 | |distance=9 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-16 |
|end=49023694 | |end=49023694 | ||
|end_of_center_position=49023687 | |end_of_center_position=49023687 | ||
| − | |entrez_id= | + | |entrez_id=100129878 |
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=uncharacterized LOC100129878 |
| − | |gene_name= | + | |gene_id=100129878 |
| + | |gene_name=uncharacterized LOC100129878 | ||
| + | |gene_source=EntrezGene:100129878 | ||
| + | |gene_symbol=LOC100129878 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id= |
| − | |nearest_promoter_id= | + | |nearest_ensembl=ENSG00000264269 |
| − | |nearest_refseq= | + | |nearest_promoter_id=NR_148999 |
| − | |nearest_unigene= | + | |nearest_refseq=NR_148999 |
| + | |nearest_unigene=Hs.437704 | ||
|num_trans=2 | |num_trans=2 | ||
|species=human | |species=human | ||
| Line 22: | Line 27: | ||
|start_of_center_position=49023686 | |start_of_center_position=49023686 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000584252.1 | + | |transcript_name=ENST00000584252.1 NR_148999 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_227046.1 | |tss_id=hg_227046.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 10:20, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49023686 |
|---|---|
| End of the center position in the TSS region: | 49023687 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000584252.1 NR_148999 |
|---|---|
| Distance: | 9 |
| Num_trans: | 2 |
| All_trans: | ENST00000584252.1:9 NR_148999:9 |
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NR_148999 |
| Entrez ID: | 100129878 |
| Nearest Unigene: | Hs.437704 |
| Nearest Refseq: | NR_148999 |
| Nearest Ensembl: | ENSG00000264269 |
| Gene Name: | uncharacterized LOC100129878 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100129878 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
