Difference between revisions of "TSS:Hg 231570.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PGR1= | |PGR1= | ||
|ZADH3= | |ZADH3= | ||
| − | |all_trans=ENST00000422125.1:-18 | + | |all_trans=ENST00000422125.1:-18 ENST00000407693.7:26 NM_001146108:26 AK309450:26 AK091948:28 D49387:48 ENST00000374313.5:-139 AK309866:-144 ENST00000538962.7:-158 AK298379:-158 NM_001146109:-178 AK289597:-178 ENST00000466771.6:-216 NM_012212:242 BC035228:242 ENST00000309195.9:266 ENST00000374308.1:266 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-18 | |distance=-18 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-28 |
|end=111599677 | |end=111599677 | ||
|end_of_center_position=111599675 | |end_of_center_position=111599675 | ||
|entrez_id=22949 | |entrez_id=22949 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=LTB4DH | + | |gene_alias=LTB4DH{{!}}PGR1{{!}}ZADH3 |
|gene_description=prostaglandin reductase 1 | |gene_description=prostaglandin reductase 1 | ||
|gene_id=22949 | |gene_id=22949 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_012212 | |nearest_refseq=NM_012212 | ||
|nearest_unigene=Hs.584864 | |nearest_unigene=Hs.584864 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=111599672 | |start=111599672 | ||
|start_of_center_position=111599674 | |start_of_center_position=111599674 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000422125 | + | |transcript_name=ENST00000422125.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_231570.1 | |tss_id=hg_231570.1 | ||
Revision as of 12:04, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 111599674 |
|---|---|
| End of the center position in the TSS region: | 111599675 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000422125.1 |
|---|---|
| Distance: | -18 |
| Num_trans: | 17 |
| All_trans: | ENST00000422125.1:-18 ENST00000407693.7:26 NM_001146108:26 AK309450:26 AK091948:28 D49387:48 ENST00000374313.5:-139 AK309866:-144 ENST00000538962.7:-158 AK298379:-158 NM_001146109:-178 AK289597:-178 ENST00000466771.6:-216 NM_012212:242 BC035228:242 ENST00000309195.9:266 ENST00000374308.1:266 |
TATA-Box annotation
| Distance to TSS: | -28 |
|---|---|
| Nearest PromoterID: | NM_001146108 |
| Entrez ID: | 22949 |
| Nearest Unigene: | Hs.584864 |
| Nearest Refseq: | NM_012212 |
| Nearest Ensembl: | ENSG00000106853 |
| Gene Name: | prostaglandin reductase 1 |
| Gene Alias: | LTB4DH|PGR1|ZADH3 |
| Gene Description: | prostaglandin reductase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
