Difference between revisions of "TSS:Hg 232068.1"
From referenceTSS
| Line 3: | Line 3: | ||
|NS5ATP13= | |NS5ATP13= | ||
|P130= | |P130= | ||
| + | |all_trans=ENST00000461421.5:0 DQ891862:1 DQ895051:1 AB383719:2 AY820769:2 ENST00000476468.5:4 ENST00000488254.6:-5 ENST00000603946.5:-5 BC001883:-5 BC006769:-5 ENST00000370007.5:6 D21262:6 ENST00000464969.6:-14 AK056755:-14 ENST00000605788.6:-20 NM_001284389:-20 NM_004741:-20 AK225101:-20 AK314363:-20 Z34289:-49 LF211442:-57 MA447019:-57 ENST00000405356.5:-233 NM_001284388:-233 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=26 |
|end=102152423 | |end=102152423 | ||
|end_of_center_position=102152409 | |end_of_center_position=102152409 | ||
|entrez_id=9221 | |entrez_id=9221 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=NOPP130 | + | |gene_alias=NOPP130{{!}}NOPP140{{!}}NS5ATP13{{!}}P130 |
|gene_description=nucleolar and coiled-body phosphoprotein 1 | |gene_description=nucleolar and coiled-body phosphoprotein 1 | ||
| − | |gene_name=NOLC1 | + | |gene_id=9221 |
| + | |gene_name=nucleolar and coiled-body phosphoprotein 1 | ||
| + | |gene_source=HGNC:15608 | ||
| + | |gene_symbol=NOLC1 | ||
| + | |gene_synonyms=KIAA0035 NOPP130 NOPP140 P130 Srp40 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15608 | ||
|nearest_ensembl=ENSG00000166197 | |nearest_ensembl=ENSG00000166197 | ||
|nearest_promoter_id=NM_001284389 | |nearest_promoter_id=NM_001284389 | ||
|nearest_refseq=NM_004741 | |nearest_refseq=NM_004741 | ||
|nearest_unigene=Hs.523238 | |nearest_unigene=Hs.523238 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=102152407 | |start=102152407 | ||
|start_of_center_position=102152408 | |start_of_center_position=102152408 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000461421.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232068.1 | |tss_id=hg_232068.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=S4R349 | ||
}} | }} | ||
Revision as of 12:16, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102152408 |
|---|---|
| End of the center position in the TSS region: | 102152409 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000461421.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000461421.5:0 DQ891862:1 DQ895051:1 AB383719:2 AY820769:2 ENST00000476468.5:4 ENST00000488254.6:-5 ENST00000603946.5:-5 BC001883:-5 BC006769:-5 ENST00000370007.5:6 D21262:6 ENST00000464969.6:-14 AK056755:-14 ENST00000605788.6:-20 NM_001284389:-20 NM_004741:-20 AK225101:-20 AK314363:-20 Z34289:-49 LF211442:-57 MA447019:-57 ENST00000405356.5:-233 NM_001284388:-233 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_001284389 |
| Entrez ID: | 9221 |
| Nearest Unigene: | Hs.523238 |
| Nearest Refseq: | NM_004741 |
| Nearest Ensembl: | ENSG00000166197 |
| Gene Name: | nucleolar and coiled-body phosphoprotein 1 |
| Gene Alias: | NOPP130|NOPP140|NS5ATP13|P130 |
| Gene Description: | nucleolar and coiled-body phosphoprotein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
