Difference between revisions of "TSS:Hg 232210.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HM370395:272 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=272 |
|distance_to_tss=176845 | |distance_to_tss=176845 | ||
|end=19551707 | |end=19551707 | ||
| Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC101928834 | |gene_description=uncharacterized LOC101928834 | ||
| − | |gene_name= | + | |gene_id=9576 |
| + | |gene_name=sperm associated antigen 6 | ||
| + | |gene_source=HGNC:11215 | ||
| + | |gene_symbol=SPAG6 | ||
| + | |gene_synonyms=CFAP194 CT141 FAP194 PF16 Repro-SA-1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:11215 | ||
|nearest_ensembl=ENSG00000233968 | |nearest_ensembl=ENSG00000233968 | ||
|nearest_promoter_id=NR_120646 | |nearest_promoter_id=NR_120646 | ||
|nearest_refseq=NR_120646 | |nearest_refseq=NR_120646 | ||
|nearest_unigene=Hs.676482 | |nearest_unigene=Hs.676482 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=19551703 | |start=19551703 | ||
|start_of_center_position=22386657 | |start_of_center_position=22386657 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=HM370395 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232210.1 | |tss_id=hg_232210.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=E0ZS56 | ||
}} | }} | ||
Revision as of 12:19, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22386657 |
|---|---|
| End of the center position in the TSS region: | 22386658 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | HM370395 |
|---|---|
| Distance: | 272 |
| Num_trans: | 1 |
| All_trans: | HM370395:272 |
TATA-Box annotation
| Distance to TSS: | 176845 |
|---|---|
| Nearest PromoterID: | NR_120646 |
| Entrez ID: | 101928834 |
| Nearest Unigene: | Hs.676482 |
| Nearest Refseq: | NR_120646 |
| Nearest Ensembl: | ENSG00000233968 |
| Gene Name: | sperm associated antigen 6 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101928834 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
