Difference between revisions of "TSS:Hg 232223.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000536334.5:-3 ENST00000490841.6:-3 ENST00000376137.8:-3 NM_001348029:-3 NM_001348030:-3 NM_001178125:-3 NM_001178119:-3 NM_001178121:-3 NM_001178122:-3 NM_001178123:-3 NM_001178124:-3 NM_001012751:-3 NM_001178120:-3 NM_001348034:-3 NM_001348033:-3 NM_001178116:-3 NM_001348032:-3 NM_001348031:-3 NM_005470:-3 NM_001012752:-3 NR_145410:-3 LF383677:-3 MA619254:-3 ENST00000376138.7:50 AB040151:50 ENST00000376166.5:94 ENST00000346832.10:94 AK126803:94 AK298646:96 AF260262:99 ENST00000376160.5:107 ENST00000376139.6:109 ENST00000376140.4:122 NM_001012750:122 AK291823:132 BC024254:142 AB209268:142 ENST00000376142.6:145 ENST00000359188.8:145 BC013238:145 U87166:145 AF006516:151 LF346276:182 MA581853:182 ENST00000376170.8:188 AF001628:190 AK296751:195 AF540955:205 FJ380057:217 FJ380058:217 FJ380059:217 AB529081:217 KJ904640:218 LF346275:282 MA581852:282 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-3 |
| − | |distance_to_tss= | + | |distance_to_tss=68426 |
|end=248422 | |end=248422 | ||
|end_of_center_position=26861082 | |end_of_center_position=26861082 | ||
| − | |entrez_id= | + | |entrez_id=10771 |
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias= | + | |gene_alias=BRAM1{{!}}BS69{{!}}MRD30 |
| − | |gene_description= | + | |gene_description=zinc finger MYND-type containing 11 |
| − | |gene_name= | + | |gene_id=10006 |
| − | |gene_type= | + | |gene_name=abl interactor 1 |
| + | |gene_source=HGNC:11320 | ||
| + | |gene_symbol=ABI1 | ||
| + | |gene_synonyms=ABI-1 E3B1 | ||
| + | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11320 | ||
|hsa-mir-7641-2= | |hsa-mir-7641-2= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000015171 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001202467 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_006624 |
| − | |nearest_unigene= | + | |nearest_unigene=Hs.292265 |
| − | |num_trans= | + | |num_trans=55 |
|species=human | |species=human | ||
|start=248418 | |start=248418 | ||
|start_of_center_position=26861081 | |start_of_center_position=26861081 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=81(GTTCCTAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000536334.5 ENST00000490841.6 ENST00000376137.8 NM_001348029 NM_001348030 NM_001178125 NM_001178119 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001012751 NM_001178120 NM_001348034 NM_001348033 NM_001178116 NM_001348032 NM_001348031 NM_005470 NM_001012752 NR_145410 LF383677 MA619254 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232223.1 | |tss_id=hg_232223.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B6VEX3 B6VEX4 Q8IZP0 | ||
}} | }} | ||
Revision as of 12:19, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26861081 |
|---|---|
| End of the center position in the TSS region: | 26861082 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000536334.5 ENST00000490841.6 ENST00000376137.8 NM_001348029 NM_001348030 NM_001178125 NM_001178119 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001012751 NM_001178120 NM_001348034 NM_001348033 NM_001178116 NM_001348032 NM_001348031 NM_005470 NM_001012752 NR_145410 LF383677 MA619254 |
|---|---|
| Distance: | -3 |
| Num_trans: | 55 |
| All_trans: | ENST00000536334.5:-3 ENST00000490841.6:-3 ENST00000376137.8:-3 NM_001348029:-3 NM_001348030:-3 NM_001178125:-3 NM_001178119:-3 NM_001178121:-3 NM_001178122:-3 NM_001178123:-3 NM_001178124:-3 NM_001012751:-3 NM_001178120:-3 NM_001348034:-3 NM_001348033:-3 NM_001178116:-3 NM_001348032:-3 NM_001348031:-3 NM_005470:-3 NM_001012752:-3 NR_145410:-3 LF383677:-3 MA619254:-3 ENST00000376138.7:50 AB040151:50 ENST00000376166.5:94 ENST00000346832.10:94 AK126803:94 AK298646:96 AF260262:99 ENST00000376160.5:107 ENST00000376139.6:109 ENST00000376140.4:122 NM_001012750:122 AK291823:132 BC024254:142 AB209268:142 ENST00000376142.6:145 ENST00000359188.8:145 BC013238:145 U87166:145 AF006516:151 LF346276:182 MA581853:182 ENST00000376170.8:188 AF001628:190 AK296751:195 AF540955:205 FJ380057:217 FJ380058:217 FJ380059:217 AB529081:217 KJ904640:218 LF346275:282 MA581852:282 |
TATA-Box annotation
| Distance to TSS: | 68426 |
|---|---|
| Nearest PromoterID: | NM_001202467 |
| Entrez ID: | 10771 |
| Nearest Unigene: | Hs.292265 |
| Nearest Refseq: | NM_006624 |
| Nearest Ensembl: | ENSG00000015171 |
| Gene Name: | abl interactor 1 |
| Gene Alias: | BRAM1|BS69|MRD30 |
| Gene Description: | zinc finger MYND-type containing 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 81(GTTCCTAAAAGG,-,0.00) |
