Difference between revisions of "TSS:Hg 232262.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CCNX= | |CCNX= | ||
|CFP1= | |CFP1= | ||
| − | |all_trans= | + | |all_trans=ENST00000611781.4:13 ENST00000374660.6:-50 ENST00000602533.6:-50 ENST00000361713.1:82 NM_052997:82 AF269087:82 BC172447:181 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=13 |
|distance_to_tss=139 | |distance_to_tss=139 | ||
|end=35337013 | |end=35337013 | ||
| Line 12: | Line 12: | ||
|entrez_id=219771 | |entrez_id=219771 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=C10orf9 | + | |gene_alias=C10orf9{{!}}CBCP1{{!}}CCNX{{!}}CFP1 |
|gene_description=cyclin Y | |gene_description=cyclin Y | ||
| − | |gene_id= | + | |gene_id=91074 |
| − | |gene_name= | + | |gene_name=ankyrin repeat domain 30A |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:17234 |
| − | |gene_symbol= | + | |gene_symbol=ANKRD30A |
| − | |gene_synonyms= | + | |gene_synonyms=NY-BR-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:17234 |
|nearest_ensembl=ENSG00000108100 | |nearest_ensembl=ENSG00000108100 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282852 |
|nearest_refseq=NM_145012 | |nearest_refseq=NM_145012 | ||
|nearest_unigene=Hs.14745 | |nearest_unigene=Hs.14745 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=35337012 | |start=35337012 | ||
|start_of_center_position=37125774 | |start_of_center_position=37125774 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000611781.4 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232262.1 | |tss_id=hg_232262.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9BXX3 |
}} | }} | ||
Revision as of 12:20, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37125774 |
|---|---|
| End of the center position in the TSS region: | 37125775 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000611781.4 |
|---|---|
| Distance: | 13 |
| Num_trans: | 7 |
| All_trans: | ENST00000611781.4:13 ENST00000374660.6:-50 ENST00000602533.6:-50 ENST00000361713.1:82 NM_052997:82 AF269087:82 BC172447:181 |
TATA-Box annotation
| Distance to TSS: | 139 |
|---|---|
| Nearest PromoterID: | NM_001282852 |
| Entrez ID: | 219771 |
| Nearest Unigene: | Hs.14745 |
| Nearest Refseq: | NM_145012 |
| Nearest Ensembl: | ENSG00000108100 |
| Gene Name: | ankyrin repeat domain 30A |
| Gene Alias: | C10orf9|CBCP1|CCNX|CFP1 |
| Gene Description: | cyclin Y |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
