Difference between revisions of "TSS:Hg 232264.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TPCAT-10-36067= | |TPCAT-10-36067= | ||
| + | |all_trans=AB462925:-11 AY184389:-11 HQ258633:-18 KJ901837:-18 AF063599:51 BC126119:-68 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-11 |
|distance_to_tss=26166 | |distance_to_tss=26166 | ||
|end=35804470 | |end=35804470 | ||
| Line 9: | Line 10: | ||
|entrez_id=102578074 | |entrez_id=102578074 | ||
|gc_percent=0.323383 | |gc_percent=0.323383 | ||
| − | |gene_alias=LINC01452 | + | |gene_alias=LINC01452{{!}}TPCAT-10-36067 |
| − | |gene_description=prostate cancer associated transcript 5 | + | |gene_description=prostate cancer associated transcript 5 |
| − | | | + | |gene_id=7581 |
| + | |gene_name=zinc finger protein 33A | ||
| + | |gene_source=HGNC:13096 | ||
| + | |gene_symbol=ZNF33A | ||
| + | |gene_synonyms=FLJ23404 KIAA0065 KOX31 KOX5 ZZAPK | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:13096 | ||
|nearest_ensembl=ENSG00000280719 | |nearest_ensembl=ENSG00000280719 | ||
|nearest_promoter_id=NR_110138 | |nearest_promoter_id=NR_110138 | ||
|nearest_refseq=NR_110138 | |nearest_refseq=NR_110138 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=35804466 | |start=35804466 | ||
|start_of_center_position=38016879 | |start_of_center_position=38016879 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AB462925 AY184389 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232264.1 | |tss_id=hg_232264.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:20, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 38016879 |
|---|---|
| End of the center position in the TSS region: | 38016880 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB462925 AY184389 |
|---|---|
| Distance: | -11 |
| Num_trans: | 6 |
| All_trans: | AB462925:-11 AY184389:-11 HQ258633:-18 KJ901837:-18 AF063599:51 BC126119:-68 |
TATA-Box annotation
| Distance to TSS: | 26166 |
|---|---|
| Nearest PromoterID: | NR_110138 |
| Entrez ID: | 102578074 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_110138 |
| Nearest Ensembl: | ENSG00000280719 |
| Gene Name: | zinc finger protein 33A |
| Gene Alias: | LINC01452|TPCAT-10-36067 |
| Gene Description: | prostate cancer associated transcript 5 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.323383 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
