Difference between revisions of "TSS:Hg 232302.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PDZK4= | |PDZK4= | ||
|PDZK5C= | |PDZK5C= | ||
| + | |all_trans=BC029839:-107 BC047597:-119 ENST00000311787.6:-120 NM_001164484:-120 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-107 |
|distance_to_tss=62748 | |distance_to_tss=62748 | ||
|end=48112397 | |end=48112397 | ||
| Line 10: | Line 11: | ||
|entrez_id=143162 | |entrez_id=143162 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| − | |gene_alias=PDZD5C | + | |gene_alias=PDZD5C{{!}}PDZK4{{!}}PDZK5C |
|gene_description=FERM and PDZ domain containing 2 | |gene_description=FERM and PDZ domain containing 2 | ||
| − | |gene_name= | + | |gene_id=170370 |
| + | |gene_name=family with sequence similarity 170 member B | ||
| + | |gene_source=HGNC:19736 | ||
| + | |gene_symbol=FAM170B | ||
| + | |gene_synonyms=AC084727.4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19736 | ||
|nearest_ensembl=ENSG00000170324 | |nearest_ensembl=ENSG00000170324 | ||
|nearest_promoter_id=NM_001042512 | |nearest_promoter_id=NM_001042512 | ||
|nearest_refseq=NM_152428 | |nearest_refseq=NM_152428 | ||
|nearest_unigene=Hs.664786 | |nearest_unigene=Hs.664786 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=48112393 | |start=48112393 | ||
|start_of_center_position=49133900 | |start_of_center_position=49133900 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=75(CATTTTTAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=BC029839 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232302.1 | |tss_id=hg_232302.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:21, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49133900 |
|---|---|
| End of the center position in the TSS region: | 49133901 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC029839 |
|---|---|
| Distance: | -107 |
| Num_trans: | 4 |
| All_trans: | BC029839:-107 BC047597:-119 ENST00000311787.6:-120 NM_001164484:-120 |
TATA-Box annotation
| Distance to TSS: | 62748 |
|---|---|
| Nearest PromoterID: | NM_001042512 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | family with sequence similarity 170 member B |
| Gene Alias: | PDZD5C|PDZK4|PDZK5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 75(CATTTTTAAAGG,-,0.00) |
