Difference between revisions of "TSS:Hg 232308.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|OOMD2= | |OOMD2= | ||
| − | |all_trans= | + | |all_trans=NM_020986:0 NM_020985:0 ENST00000460699.5:10 ENST00000351556.7:10 ENST00000395559.6:10 D82340:10 ENST00000481336.5:21 D82339:21 D82341:21 |
|bA631M21.2= | |bA631M21.2= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-128 | |distance_to_tss=-128 | ||
|end=49366 | |end=49366 | ||
| Line 11: | Line 11: | ||
|entrez_id=347688 | |entrez_id=347688 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=OOMD | + | |gene_alias=OOMD{{!}}OOMD2{{!}}bA631M21.2 |
|gene_description=tubulin beta 8 class VIII | |gene_description=tubulin beta 8 class VIII | ||
| − | |gene_id= | + | |gene_id=1103 |
| − | |gene_name= | + | |gene_name=choline O-acetyltransferase |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1912 |
| − | |gene_symbol= | + | |gene_symbol=CHAT |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1912 |
|nearest_ensembl=ENSG00000261456 | |nearest_ensembl=ENSG00000261456 | ||
|nearest_promoter_id=NM_177987 | |nearest_promoter_id=NM_177987 | ||
|nearest_refseq=NM_177987 | |nearest_refseq=NM_177987 | ||
|nearest_unigene=Hs.532659 | |nearest_unigene=Hs.532659 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=49365 | |start=49365 | ||
|start_of_center_position=49613097 | |start_of_center_position=49613097 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=35(GGCTATTTAAAC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_020986 NM_020985 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232308.1 | |tss_id=hg_232308.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q6LEN6 |
}} | }} | ||
Revision as of 12:21, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49613097 |
|---|---|
| End of the center position in the TSS region: | 49613098 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_020986 NM_020985 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | NM_020986:0 NM_020985:0 ENST00000460699.5:10 ENST00000351556.7:10 ENST00000395559.6:10 D82340:10 ENST00000481336.5:21 D82339:21 D82341:21 |
TATA-Box annotation
| Distance to TSS: | -128 |
|---|---|
| Nearest PromoterID: | NM_177987 |
| Entrez ID: | 347688 |
| Nearest Unigene: | Hs.532659 |
| Nearest Refseq: | NM_177987 |
| Nearest Ensembl: | ENSG00000261456 |
| Gene Name: | choline O-acetyltransferase |
| Gene Alias: | OOMD|OOMD2|bA631M21.2 |
| Gene Description: | tubulin beta 8 class VIII |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 35(GGCTATTTAAAC,-,0.00) |
