Difference between revisions of "TSS:Hg 232330.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000379954.5:22 X01057:22 K03122:22 ENST00000379959.8:-36 NM_001308243:-36 NM_001308242:-36 NM_000417:-36 AK313847:-36 ENST00000644262.1:-39 AK223313:39 ENST00000256876.10:41 BC156627:180 BC152889:180 AB528862:180 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=22 |
| − | |distance_to_tss= | + | |distance_to_tss=10158 |
|end=59352391 | |end=59352391 | ||
|end_of_center_position=6062331 | |end_of_center_position=6062331 | ||
| Line 11: | Line 11: | ||
|gene_alias=FAM13C1 | |gene_alias=FAM13C1 | ||
|gene_description=family with sequence similarity 13 member C | |gene_description=family with sequence similarity 13 member C | ||
| − | |gene_id= | + | |gene_id=3559 |
| − | |gene_name= | + | |gene_name=interleukin 2 receptor subunit alpha |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:6008 |
| − | |gene_symbol= | + | |gene_symbol=IL2RA |
| − | |gene_synonyms= | + | |gene_synonyms=CD25 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:6008 |
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_198215 |
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=59352390 | |start=59352390 | ||
|start_of_center_position=6062330 | |start_of_center_position=6062330 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000379954.5 X01057 K03122 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232330.1 | |tss_id=hg_232330.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5W005 |
}} | }} | ||
Revision as of 12:22, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 6062330 |
|---|---|
| End of the center position in the TSS region: | 6062331 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000379954.5 X01057 K03122 |
|---|---|
| Distance: | 22 |
| Num_trans: | 14 |
| All_trans: | ENST00000379954.5:22 X01057:22 K03122:22 ENST00000379959.8:-36 NM_001308243:-36 NM_001308242:-36 NM_000417:-36 AK313847:-36 ENST00000644262.1:-39 AK223313:39 ENST00000256876.10:41 BC156627:180 BC152889:180 AB528862:180 |
TATA-Box annotation
| Distance to TSS: | 10158 |
|---|---|
| Nearest PromoterID: | NM_198215 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | interleukin 2 receptor subunit alpha |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
