Difference between revisions of "TSS:Hg 232333.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|MRT37= | |MRT37= | ||
| − | |all_trans= | + | |all_trans=BC017404:166 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=166 |
|distance_to_tss=58310 | |distance_to_tss=58310 | ||
|end=60082706 | |end=60082706 | ||
| Line 10: | Line 10: | ||
|entrez_id=288 | |entrez_id=288 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=ANKYRIN-G | + | |gene_alias=ANKYRIN-G{{!}}MRT37 |
|gene_description=ankyrin 3 | |gene_description=ankyrin 3 | ||
| − | |gene_id= | + | |gene_id=84159 |
| − | |gene_name= | + | |gene_name=AT-rich interaction domain 5B |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:17362 |
| − | |gene_symbol= | + | |gene_symbol=ARID5B |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ21150 MRF2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:17362 |
|nearest_ensembl=ENSG00000151150 | |nearest_ensembl=ENSG00000151150 | ||
|nearest_promoter_id=NM_001149 | |nearest_promoter_id=NM_001149 | ||
|nearest_refseq=NM_001149 | |nearest_refseq=NM_001149 | ||
|nearest_unigene=Hs.499725 | |nearest_unigene=Hs.499725 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=60082705 | |start=60082705 | ||
|start_of_center_position=62095079 | |start_of_center_position=62095079 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=80(GCACATAAAAAG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=BC017404 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232333.1 | |tss_id=hg_232333.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 12:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62095079 |
|---|---|
| End of the center position in the TSS region: | 62095080 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC017404 |
|---|---|
| Distance: | 166 |
| Num_trans: | 1 |
| All_trans: | BC017404:166 |
TATA-Box annotation
| Distance to TSS: | 58310 |
|---|---|
| Nearest PromoterID: | NM_001149 |
| Entrez ID: | 288 |
| Nearest Unigene: | Hs.499725 |
| Nearest Refseq: | NM_001149 |
| Nearest Ensembl: | ENSG00000151150 |
| Gene Name: | AT-rich interaction domain 5B |
| Gene Alias: | ANKYRIN-G|MRT37 |
| Gene Description: | ankyrin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 80(GCACATAAAAAG,-,0.00) |
