Difference between revisions of "TSS:Hg 232341.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|PFK2= | |PFK2= | ||
| − | |all_trans= | + | |all_trans=BC004511:142 ENST00000490442.5:-181 AF132363:-181 ENST00000478698.1:281 AF132364:429 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=142 |
| − | |distance_to_tss= | + | |distance_to_tss=31922 |
|end=6234860 | |end=6234860 | ||
|end_of_center_position=68338523 | |end_of_center_position=68338523 | ||
|entrez_id=5209 | |entrez_id=5209 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=IPFK2 | + | |gene_alias=IPFK2{{!}}PFK2{{!}}iPFK-2 |
| − | |gene_description= | + | |gene_description=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 |
| − | |gene_id= | + | |gene_id=3189 |
| − | |gene_name= | + | |gene_name=heterogeneous nuclear ribonucleoprotein H3 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:5043 |
| − | |gene_symbol= | + | |gene_symbol=HNRNPH3 |
| − | |gene_synonyms= | + | |gene_synonyms=2H9 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:5043 |
|iPFK-2= | |iPFK-2= | ||
|nearest_ensembl=ENSG00000170525 | |nearest_ensembl=ENSG00000170525 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363545 |
|nearest_refseq=NM_004566 | |nearest_refseq=NM_004566 | ||
|nearest_unigene=Hs.195471 | |nearest_unigene=Hs.195471 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=6234847 | |start=6234847 | ||
|start_of_center_position=68338522 | |start_of_center_position=68338522 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=49(GCCTAGATAGGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=BC004511 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232341.1 | |tss_id=hg_232341.1 | ||
Revision as of 12:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68338522 |
|---|---|
| End of the center position in the TSS region: | 68338523 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC004511 |
|---|---|
| Distance: | 142 |
| Num_trans: | 5 |
| All_trans: | BC004511:142 ENST00000490442.5:-181 AF132363:-181 ENST00000478698.1:281 AF132364:429 |
TATA-Box annotation
| Distance to TSS: | 31922 |
|---|---|
| Nearest PromoterID: | NM_001363545 |
| Entrez ID: | 5209 |
| Nearest Unigene: | Hs.195471 |
| Nearest Refseq: | NM_004566 |
| Nearest Ensembl: | ENSG00000170525 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein H3 |
| Gene Alias: | IPFK2|PFK2|iPFK-2 |
| Gene Description: | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(GCCTAGATAGGG,-,0.00) |
