Difference between revisions of "TSS:Hg 232342.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CMT4E= | |CMT4E= | ||
|KROX20= | |KROX20= | ||
| − | |all_trans= | + | |all_trans=ENST00000630771.2:-30 AK023438:40 AF465616:40 ENST00000538031.5:42 AK307550:51 ENST00000543719.5:52 AK298004:52 ENST00000541012.5:53 BC058846:55 AK001701:62 AY249140:62 ENST00000543229.5:65 ENST00000539539.5:65 ENST00000265872.11:65 NR_104262:65 NM_001282960:65 NM_001282959:65 NM_018237:65 AK292649:65 AK307704:65 AK122871:65 AK299307:65 ENST00000543225.5:68 ENST00000536012.5:68 AK307671:68 BX647943:68 ENST00000494903.2:78 ENST00000540210.5:81 BC130626:81 BC132725:81 BC144118:81 BC108682:92 ENST00000536391.5:-162 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-30 |
|distance_to_tss=-61 | |distance_to_tss=-61 | ||
|end=62819228 | |end=62819228 | ||
| Line 12: | Line 12: | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=AT591 | + | |gene_alias=AT591{{!}}CHN1{{!}}CMT1D{{!}}CMT4E{{!}}KROX20 |
|gene_description=early growth response 2 | |gene_description=early growth response 2 | ||
| − | |gene_id= | + | |gene_id=55749 |
| − | |gene_name= | + | |gene_name=cell division cycle and apoptosis regulator 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:24236 |
| − | |gene_symbol= | + | |gene_symbol=CCAR1 |
| − | |gene_synonyms= | + | |gene_synonyms=CARP-1 CARP1 FLJ10590 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:24236 |
|nearest_ensembl=ENSG00000122877 | |nearest_ensembl=ENSG00000122877 | ||
|nearest_promoter_id=NM_001136178 | |nearest_promoter_id=NM_001136178 | ||
|nearest_refseq=NM_000399 | |nearest_refseq=NM_000399 | ||
|nearest_unigene=Hs.1395 | |nearest_unigene=Hs.1395 | ||
| − | |num_trans= | + | |num_trans=33 |
|species=human | |species=human | ||
|start=62819227 | |start=62819227 | ||
|start_of_center_position=68721173 | |start_of_center_position=68721173 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000630771.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232342.1 | |tss_id=hg_232342.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=F5H3E1 |
}} | }} | ||
Revision as of 12:22, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68721173 |
|---|---|
| End of the center position in the TSS region: | 68721174 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000630771.2 |
|---|---|
| Distance: | -30 |
| Num_trans: | 33 |
| All_trans: | ENST00000630771.2:-30 AK023438:40 AF465616:40 ENST00000538031.5:42 AK307550:51 ENST00000543719.5:52 AK298004:52 ENST00000541012.5:53 BC058846:55 AK001701:62 AY249140:62 ENST00000543229.5:65 ENST00000539539.5:65 ENST00000265872.11:65 NR_104262:65 NM_001282960:65 NM_001282959:65 NM_018237:65 AK292649:65 AK307704:65 AK122871:65 AK299307:65 ENST00000543225.5:68 ENST00000536012.5:68 AK307671:68 BX647943:68 ENST00000494903.2:78 ENST00000540210.5:81 BC130626:81 BC132725:81 BC144118:81 BC108682:92 ENST00000536391.5:-162 |
TATA-Box annotation
| Distance to TSS: | -61 |
|---|---|
| Nearest PromoterID: | NM_001136178 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | cell division cycle and apoptosis regulator 1 |
| Gene Alias: | AT591|CHN1|CMT1D|CMT4E|KROX20 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
