Difference between revisions of "TSS:Hg 232388.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000498394.5:0 ENST00000313132.8:-3 L08666:-3 BC012883:-4 ENST00000468285.1:5 AK296635:-16 AK315919:-22 BC072407:-36 ENST00000481876.5:-37 LF333488:37 MA569065:37 ENST00000475142.5:-38 BC000165:-46 ENST00000470745.5:-47 ENST00000472137.5:-76 ENST00000332211.10:-100 ENST00000447677.5:175 ENST00000344036.8:-206 L06328:286 CU687220:299 KJ892371:299 GQ891299:300 LF384970:-309 MA620547:-309 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=31061 |
|end=74119772 | |end=74119772 | ||
|end_of_center_position=75210855 | |end_of_center_position=75210855 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.363184 | |gc_percent=0.363184 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=adaptor related protein complex 3 mu 1 | + | |gene_description=adaptor related protein complex 3 subunit mu 1 |
| − | |gene_name= | + | |gene_id=7417 |
| + | |gene_name=voltage dependent anion channel 2 | ||
| + | |gene_source=HGNC:12672 | ||
| + | |gene_symbol=VDAC2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12672 | ||
|nearest_ensembl=ENSG00000185009 | |nearest_ensembl=ENSG00000185009 | ||
|nearest_promoter_id=NM_001320264 | |nearest_promoter_id=NM_001320264 | ||
|nearest_refseq=NM_012095 | |nearest_refseq=NM_012095 | ||
|nearest_unigene=Hs.500104 | |nearest_unigene=Hs.500104 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=74119762 | |start=74119762 | ||
|start_of_center_position=75210854 | |start_of_center_position=75210854 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=60(GCCTTTAAAGTA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000498394.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232388.1 | |tss_id=hg_232388.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:23, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75210854 |
|---|---|
| End of the center position in the TSS region: | 75210855 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000498394.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000498394.5:0 ENST00000313132.8:-3 L08666:-3 BC012883:-4 ENST00000468285.1:5 AK296635:-16 AK315919:-22 BC072407:-36 ENST00000481876.5:-37 LF333488:37 MA569065:37 ENST00000475142.5:-38 BC000165:-46 ENST00000470745.5:-47 ENST00000472137.5:-76 ENST00000332211.10:-100 ENST00000447677.5:175 ENST00000344036.8:-206 L06328:286 CU687220:299 KJ892371:299 GQ891299:300 LF384970:-309 MA620547:-309 |
TATA-Box annotation
| Distance to TSS: | 31061 |
|---|---|
| Nearest PromoterID: | NM_001320264 |
| Entrez ID: | 26985 |
| Nearest Unigene: | Hs.500104 |
| Nearest Refseq: | NM_012095 |
| Nearest Ensembl: | ENSG00000185009 |
| Gene Name: | voltage dependent anion channel 2 |
| Gene Alias: | - |
| Gene Description: | adaptor related protein complex 3 subunit mu 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 60(GCCTTTAAAGTA,+,0.00) |
