Difference between revisions of "TSS:Hg 232425.1"
From referenceTSS
| Line 9: | Line 9: | ||
|SPA2= | |SPA2= | ||
|SPAII= | |SPAII= | ||
| + | |all_trans=BC066348:-16 BC090922:-16 ENST00000372267.6:73 BC117332:156 BC117334:156 ENST00000372263.4:212 NM_001331125:212 NM_001012973:212 HQ258029:239 KJ895824:239 EU446996:241 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-16 |
|distance_to_tss=556 | |distance_to_tss=556 | ||
|end=79559318 | |end=79559318 | ||
| Line 17: | Line 18: | ||
|entrez_id=729238 | |entrez_id=729238 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=COLEC5 | + | |gene_alias=COLEC5{{!}}PSAP{{!}}PSP-A{{!}}PSPA{{!}}SFTP1{{!}}SFTPA2B{{!}}SP-2A{{!}}SP-A{{!}}SPA2{{!}}SPAII |
|gene_description=surfactant protein A2 | |gene_description=surfactant protein A2 | ||
| − | |gene_name= | + | |gene_id=219348 |
| + | |gene_name=placenta associated 9 | ||
| + | |gene_source=HGNC:19255 | ||
| + | |gene_symbol=PLAC9 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19255 | ||
|nearest_ensembl=ENSG00000185303 | |nearest_ensembl=ENSG00000185303 | ||
|nearest_promoter_id=NM_001320814 | |nearest_promoter_id=NM_001320814 | ||
|nearest_refseq=NM_001098668 | |nearest_refseq=NM_001098668 | ||
|nearest_unigene=Hs.523084 | |nearest_unigene=Hs.523084 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=79559311 | |start=79559311 | ||
|start_of_center_position=80132517 | |start_of_center_position=80132517 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-58(CTCCTGAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=BC066348 BC090922 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232425.1 | |tss_id=hg_232425.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:24, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80132517 |
|---|---|
| End of the center position in the TSS region: | 80132518 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC066348 BC090922 |
|---|---|
| Distance: | -16 |
| Num_trans: | 11 |
| All_trans: | BC066348:-16 BC090922:-16 ENST00000372267.6:73 BC117332:156 BC117334:156 ENST00000372263.4:212 NM_001331125:212 NM_001012973:212 HQ258029:239 KJ895824:239 EU446996:241 |
TATA-Box annotation
| Distance to TSS: | 556 |
|---|---|
| Nearest PromoterID: | NM_001320814 |
| Entrez ID: | 729238 |
| Nearest Unigene: | Hs.523084 |
| Nearest Refseq: | NM_001098668 |
| Nearest Ensembl: | ENSG00000185303 |
| Gene Name: | placenta associated 9 |
| Gene Alias: | COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII |
| Gene Description: | surfactant protein A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -58(CTCCTGAAAAGG,-,0.00) |
