Difference between revisions of "TSS:Hg 232477.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PASG= | |PASG= | ||
|SMARCA6= | |SMARCA6= | ||
| + | |all_trans=ENST00000676373.1:-23 AB058698:-23 ENST00000675971.1:-33 ENST00000674725.1:-33 ENST00000674796.1:-35 ENST00000676381.1:-40 ENST00000371097.8:-85 AL834245:-85 ENST00000356016.7:-110 ENST00000675125.1:-116 NM_032440:-120 ENST00000675117.1:-129 ENST00000675537.1:-159 MP015211:185 ENST00000676314.1:341 ENST00000675915.1:341 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=-23 |
| − | |distance_to_tss= | + | |distance_to_tss=674 |
|end=94546470 | |end=94546470 | ||
|end_of_center_position=96833065 | |end_of_center_position=96833065 | ||
|entrez_id=3070 | |entrez_id=3070 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=ICF4 | + | |gene_alias=ICF4{{!}}LSH{{!}}Nbla10143{{!}}PASG{{!}}SMARCA6 |
| − | |gene_description= | + | |gene_description=helicase, lymphoid specific |
| − | |gene_name= | + | |gene_id=84458 |
| + | |gene_name=ligand dependent nuclear receptor corepressor | ||
| + | |gene_source=HGNC:29503 | ||
| + | |gene_symbol=LCOR | ||
| + | |gene_synonyms=DKFZP564P1916 FLJ13022 FLJ38026 KIAA1795 MLR2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29503 | ||
|nearest_ensembl=ENSG00000119969 | |nearest_ensembl=ENSG00000119969 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001289075 |
|nearest_refseq=NM_018063 | |nearest_refseq=NM_018063 | ||
|nearest_unigene=Hs.463677 | |nearest_unigene=Hs.463677 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=94546454 | |start=94546454 | ||
|start_of_center_position=96833064 | |start_of_center_position=96833064 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000676373.1 AB058698 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232477.1 | |tss_id=hg_232477.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:25, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 96833064 |
|---|---|
| End of the center position in the TSS region: | 96833065 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000676373.1 AB058698 |
|---|---|
| Distance: | -23 |
| Num_trans: | 16 |
| All_trans: | ENST00000676373.1:-23 AB058698:-23 ENST00000675971.1:-33 ENST00000674725.1:-33 ENST00000674796.1:-35 ENST00000676381.1:-40 ENST00000371097.8:-85 AL834245:-85 ENST00000356016.7:-110 ENST00000675125.1:-116 NM_032440:-120 ENST00000675117.1:-129 ENST00000675537.1:-159 MP015211:185 ENST00000676314.1:341 ENST00000675915.1:341 |
TATA-Box annotation
| Distance to TSS: | 674 |
|---|---|
| Nearest PromoterID: | NM_001289075 |
| Entrez ID: | 3070 |
| Nearest Unigene: | Hs.463677 |
| Nearest Refseq: | NM_018063 |
| Nearest Ensembl: | ENSG00000119969 |
| Gene Name: | ligand dependent nuclear receptor corepressor |
| Gene Alias: | ICF4|LSH|Nbla10143|PASG|SMARCA6 |
| Gene Description: | helicase, lymphoid specific |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
